Variant report

Variant	rs504572
Chromosome Location	chr19:37343856-37343857
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:37341916..37344029-chr19:37407089..37408811,2	MCF-7	breast:
2	chr19:37341751..37343883-chr19:37348520..37351258,2	K562	blood:
3	chr19:37341751..37345172-chr19:37348520..37351258,3	K562	blood:
4	chr19:37327752..37331008-chr19:37336124..37344037,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185869	Chromatin interaction
ENSG00000198453	Chromatin interaction
ENSG00000206669	Chromatin interaction
ENSG00000197863	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs485256	0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs487318	0.89[AFR][1000 genomes]
rs491951	0.85[AFR][1000 genomes]
rs500244	0.87[AFR][1000 genomes]
rs500370	0.89[AFR][1000 genomes]
rs510834	0.89[AFR][1000 genomes]
rs519455	0.89[AFR][1000 genomes]
rs526426	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs529944	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs535477	0.92[YRI][hapmap];0.97[AFR][1000 genomes]
rs562480	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs579731	0.89[AFR][1000 genomes]
rs826272	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
17	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	esv3354270	chr19:37309161-37364929	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
20	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
21	nsv458569	chr19:37331614-37412887	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv579462	chr19:37331614-37412887	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37342600-37345000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:37342800-37344200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr19:37342800-37344200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr19:37342800-37344400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr19:37342800-37344400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr19:37342800-37344400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:37342800-37344400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr19:37342800-37344400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr19:37342800-37344600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr19:37342800-37344600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr19:37342800-37344600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr19:37342800-37344600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr19:37342800-37344600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr19:37342800-37344600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr19:37342800-37344600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr19:37342800-37344600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr19:37342800-37344600	Weak transcription	Brain Hippocampus Middle	brain
18	chr19:37342800-37344600	Weak transcription	Ovary	ovary
19	chr19:37342800-37344600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr19:37342800-37344600	Weak transcription	HSMM	muscle
21	chr19:37342800-37344600	Weak transcription	NHDF-Ad	bronchial
22	chr19:37342800-37344800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:37342800-37344800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr19:37342800-37344800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr19:37342800-37344800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr19:37342800-37344800	Weak transcription	Left Ventricle	heart
27	chr19:37342800-37344800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr19:37342800-37345000	Weak transcription	Colonic Mucosa	Colon
29	chr19:37342800-37345200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr19:37342800-37345400	Weak transcription	Aorta	Aorta
31	chr19:37342800-37345800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr19:37342800-37345800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr19:37342800-37346200	Weak transcription	Fetal Thymus	thymus
34	chr19:37342800-37346200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr19:37342800-37346400	Weak transcription	Gastric	stomach
36	chr19:37342800-37346600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:37342800-37346600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr19:37342800-37346800	Weak transcription	Brain Anterior Caudate	brain
39	chr19:37342800-37346800	Weak transcription	Brain Substantia Nigra	brain
40	chr19:37342800-37346800	Weak transcription	Placenta	Placenta
41	chr19:37342800-37347400	Weak transcription	Psoas Muscle	Psoas
42	chr19:37342800-37348400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr19:37342800-37348600	Weak transcription	Esophagus	oesophagus
44	chr19:37342800-37348800	Weak transcription	Brain Angular Gyrus	brain
45	chr19:37342800-37353800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:37342800-37353800	Weak transcription	HUVEC	blood vessel
47	chr19:37342800-37355000	Weak transcription	Osteobl	bone
48	chr19:37342800-37356800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:37343000-37344000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr19:37343000-37344200	Weak transcription	Fetal Stomach	stomach

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