Variant report

Variant	rs491951
Chromosome Location	chr19:37373777-37373778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10402227	1.00[EUR][1000 genomes]
rs10403877	1.00[EUR][1000 genomes]
rs10408063	0.90[ASN][1000 genomes]
rs10410788	1.00[EUR][1000 genomes]
rs10410939	0.90[ASN][1000 genomes]
rs10411150	0.81[ASN][1000 genomes]
rs10413876	0.90[ASN][1000 genomes]
rs10414240	0.90[ASN][1000 genomes]
rs10418271	0.90[ASN][1000 genomes]
rs10419685	1.00[EUR][1000 genomes]
rs10424415	1.00[EUR][1000 genomes]
rs10426077	1.00[EUR][1000 genomes]
rs10426229	1.00[EUR][1000 genomes]
rs11878527	1.00[EUR][1000 genomes]
rs11880022	0.90[ASN][1000 genomes]
rs11880159	0.90[ASN][1000 genomes]
rs1227559	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1227561	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12459208	0.90[ASN][1000 genomes]
rs12459218	0.90[ASN][1000 genomes]
rs12459243	0.90[ASN][1000 genomes]
rs12459325	0.90[ASN][1000 genomes]
rs12459377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12459429	0.90[ASN][1000 genomes]
rs12459527	0.90[ASN][1000 genomes]
rs12459546	1.00[EUR][1000 genomes]
rs12459808	0.90[ASN][1000 genomes]
rs12459894	1.00[ASN][1000 genomes]
rs12459915	0.90[ASN][1000 genomes]
rs12460049	0.90[ASN][1000 genomes]
rs12460354	0.90[ASN][1000 genomes]
rs12460418	0.90[ASN][1000 genomes]
rs12460420	0.90[ASN][1000 genomes]
rs12460455	0.90[ASN][1000 genomes]
rs12460482	0.90[ASN][1000 genomes]
rs12460729	0.90[ASN][1000 genomes]
rs12460774	0.90[ASN][1000 genomes]
rs12461023	0.90[ASN][1000 genomes]
rs12461264	0.90[ASN][1000 genomes]
rs12461265	0.90[ASN][1000 genomes]
rs12461280	0.90[ASN][1000 genomes]
rs12461474	0.90[ASN][1000 genomes]
rs12461721	0.90[ASN][1000 genomes]
rs12461738	0.90[ASN][1000 genomes]
rs12461954	0.90[ASN][1000 genomes]
rs12462037	0.90[ASN][1000 genomes]
rs12462268	0.90[ASN][1000 genomes]
rs12462281	0.90[ASN][1000 genomes]
rs12462325	0.90[ASN][1000 genomes]
rs12462454	0.90[ASN][1000 genomes]
rs12462471	0.81[ASN][1000 genomes]
rs12463012	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1625762	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1673083	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16971568	0.90[ASN][1000 genomes]
rs16973489	0.90[ASN][1000 genomes]
rs17468285	0.90[ASN][1000 genomes]
rs1990964	1.00[ASN][1000 genomes]
rs2080821	1.00[EUR][1000 genomes]
rs2309220	0.81[EUR][1000 genomes]
rs25419	0.90[ASN][1000 genomes]
rs28465595	0.90[ASN][1000 genomes]
rs28472526	0.90[ASN][1000 genomes]
rs28645577	0.90[ASN][1000 genomes]
rs28742010	0.90[ASN][1000 genomes]
rs28818888	0.90[ASN][1000 genomes]
rs34051375	0.90[ASN][1000 genomes]
rs35621405	0.90[ASN][1000 genomes]
rs35706444	0.90[ASN][1000 genomes]
rs3859520	1.00[ASN][1000 genomes]
rs485256	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs487318	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs500244	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500370	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs504572	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs510834	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs519455	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs526426	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs529944	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs535477	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs547831	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs562480	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56286503	1.00[EUR][1000 genomes]
rs56838197	1.00[EUR][1000 genomes]
rs57427270	0.81[EUR][1000 genomes]
rs57904468	1.00[EUR][1000 genomes]
rs579731	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58245911	0.90[ASN][1000 genomes]
rs59122318	1.00[EUR][1000 genomes]
rs60268308	0.90[ASN][1000 genomes]
rs60615280	0.90[ASN][1000 genomes]
rs61750934	0.90[ASN][1000 genomes]
rs6510562	0.90[ASN][1000 genomes]
rs7252518	0.81[EUR][1000 genomes]
rs7254717	0.81[EUR][1000 genomes]
rs73609133	0.90[ASN][1000 genomes]
rs73612031	0.90[ASN][1000 genomes]
rs73612043	0.90[ASN][1000 genomes]
rs73612926	0.81[EUR][1000 genomes]
rs73615692	0.90[ASN][1000 genomes]
rs73615693	0.81[ASN][1000 genomes]
rs73626751	1.00[EUR][1000 genomes]
rs73930869	1.00[EUR][1000 genomes]
rs7508258	0.90[ASN][1000 genomes]
rs8104355	0.81[ASN][1000 genomes]
rs8105472	0.81[EUR][1000 genomes]
rs8111419	0.90[ASN][1000 genomes]
rs826272	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9304876	1.00[EUR][1000 genomes]
rs9304877	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv458569	chr19:37331614-37412887	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv579462	chr19:37331614-37412887	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37344400-37406400	ZNF genes & repeats	Liver	Liver
2	chr19:37346400-37404600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37353400-37405000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37369200-37374800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:37369400-37380800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:37371600-37374400	Weak transcription	Ovary	ovary
7	chr19:37371600-37375000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:37371600-37375000	Weak transcription	Fetal Stomach	stomach
9	chr19:37371600-37375200	Weak transcription	Gastric	stomach
10	chr19:37371600-37375200	Weak transcription	Pancreas	Pancrea
11	chr19:37371600-37375200	Weak transcription	HSMM	muscle
12	chr19:37371800-37374600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:37372200-37373800	Weak transcription	Fetal Lung	lung

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