Variant report

Variant	rs35621405
Chromosome Location	chr19:37147924-37147925
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10408063	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10408318	0.90[AFR][1000 genomes]
rs10410939	1.00[ASN][1000 genomes]
rs10411150	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10413697	0.90[AFR][1000 genomes]
rs10413876	1.00[ASN][1000 genomes]
rs10414240	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10417106	0.90[AFR][1000 genomes]
rs10417344	0.90[AFR][1000 genomes]
rs10418271	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10422700	0.90[AFR][1000 genomes]
rs10425382	0.90[AFR][1000 genomes]
rs11880022	1.00[ASN][1000 genomes]
rs11880159	1.00[ASN][1000 genomes]
rs1227559	1.00[ASN][1000 genomes]
rs1227561	1.00[ASN][1000 genomes]
rs1234513	0.82[AFR][1000 genomes]
rs12459208	1.00[ASN][1000 genomes]
rs12459218	1.00[ASN][1000 genomes]
rs12459243	1.00[ASN][1000 genomes]
rs12459325	1.00[ASN][1000 genomes]
rs12459377	0.90[ASN][1000 genomes]
rs12459429	1.00[ASN][1000 genomes]
rs12459527	1.00[ASN][1000 genomes]
rs12459808	1.00[ASN][1000 genomes]
rs12459894	0.90[ASN][1000 genomes]
rs12459915	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12459923	1.00[ASN][1000 genomes]
rs12460049	1.00[ASN][1000 genomes]
rs12460354	1.00[ASN][1000 genomes]
rs12460418	1.00[ASN][1000 genomes]
rs12460420	1.00[ASN][1000 genomes]
rs12460430	1.00[ASN][1000 genomes]
rs12460455	1.00[ASN][1000 genomes]
rs12460482	1.00[ASN][1000 genomes]
rs12460729	1.00[ASN][1000 genomes]
rs12460774	1.00[ASN][1000 genomes]
rs12461023	1.00[ASN][1000 genomes]
rs12461264	1.00[ASN][1000 genomes]
rs12461265	1.00[ASN][1000 genomes]
rs12461280	1.00[ASN][1000 genomes]
rs12461436	1.00[ASN][1000 genomes]
rs12461474	1.00[ASN][1000 genomes]
rs12461707	1.00[ASN][1000 genomes]
rs12461721	1.00[ASN][1000 genomes]
rs12461723	1.00[ASN][1000 genomes]
rs12461738	1.00[ASN][1000 genomes]
rs12461954	1.00[ASN][1000 genomes]
rs12461970	1.00[ASN][1000 genomes]
rs12462037	1.00[ASN][1000 genomes]
rs12462268	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12462281	1.00[ASN][1000 genomes]
rs12462325	1.00[ASN][1000 genomes]
rs12462454	1.00[ASN][1000 genomes]
rs12462471	0.90[ASN][1000 genomes]
rs12462635	1.00[ASN][1000 genomes]
rs12462921	1.00[ASN][1000 genomes]
rs12463012	0.90[ASN][1000 genomes]
rs12974130	1.00[ASN][1000 genomes]
rs12974446	1.00[ASN][1000 genomes]
rs13345382	0.90[AFR][1000 genomes]
rs1625762	1.00[ASN][1000 genomes]
rs1673083	1.00[ASN][1000 genomes]
rs16971568	1.00[ASN][1000 genomes]
rs16973489	1.00[ASN][1000 genomes]
rs17468285	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1990964	0.90[ASN][1000 genomes]
rs25419	1.00[ASN][1000 genomes]
rs28398875	1.00[ASN][1000 genomes]
rs28465595	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28472526	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28645577	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28742010	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28818888	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2912407	0.82[AFR][1000 genomes]
rs2912418	0.85[AFR][1000 genomes]
rs2967425	0.87[AFR][1000 genomes]
rs2967426	0.87[AFR][1000 genomes]
rs2967428	0.87[AFR][1000 genomes]
rs2967430	0.88[AFR][1000 genomes]
rs34051375	1.00[ASN][1000 genomes]
rs34106502	1.00[ASN][1000 genomes]
rs35706444	1.00[ASN][1000 genomes]
rs3859520	0.90[ASN][1000 genomes]
rs491951	0.90[ASN][1000 genomes]
rs500244	0.90[ASN][1000 genomes]
rs58245911	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58880289	0.90[AFR][1000 genomes]
rs59951429	0.95[AFR][1000 genomes]
rs60268308	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60615280	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61750934	1.00[ASN][1000 genomes]
rs6510562	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73607078	0.90[AFR][1000 genomes]
rs73609133	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73609981	0.95[AFR][1000 genomes]
rs73612010	0.93[AFR][1000 genomes]
rs73612013	0.90[AFR][1000 genomes]
rs73612031	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73612039	0.90[AFR][1000 genomes]
rs73612043	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73612047	0.90[AFR][1000 genomes]
rs73612050	0.90[AFR][1000 genomes]
rs73612052	0.90[AFR][1000 genomes]
rs73615692	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73615693	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73617803	0.83[AFR][1000 genomes]
rs7508258	1.00[ASN][1000 genomes]
rs8104355	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8111419	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv3420176	chr19:37130161-37207917	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv1061250	chr19:37134068-37188771	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a
14	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37106800-37151000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
4	chr19:37107000-37152400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37110400-37152600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:37124800-37155600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr19:37126200-37156200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:37127200-37151000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr19:37128200-37150600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:37128600-37149600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr19:37128800-37156200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:37134600-37157000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:37135200-37156200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr19:37135600-37150000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr19:37135800-37148000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
16	chr19:37135800-37150000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr19:37135800-37150800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:37135800-37156200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr19:37135800-37156400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr19:37136000-37150800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr19:37136000-37151600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
22	chr19:37136000-37152200	ZNF genes & repeats	Fetal Brain Female	brain
23	chr19:37136000-37152400	ZNF genes & repeats	A549	lung
24	chr19:37136400-37152200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr19:37137200-37150400	ZNF genes & repeats	Brain Germinal Matrix	brain
26	chr19:37137200-37151200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr19:37138200-37149200	Strong transcription	Osteobl	bone
28	chr19:37141400-37150800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr19:37141400-37151000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
30	chr19:37141400-37151000	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr19:37141400-37151200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr19:37141800-37148600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr19:37141800-37150200	ZNF genes & repeats	Ovary	ovary
34	chr19:37141800-37150600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr19:37141800-37150800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr19:37142400-37149200	Strong transcription	NH-A	brain
37	chr19:37142600-37148400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
38	chr19:37142600-37150000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr19:37142600-37156000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
40	chr19:37142800-37148000	ZNF genes & repeats	Psoas Muscle	Psoas
41	chr19:37143400-37149800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr19:37143400-37150000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr19:37143400-37150000	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr19:37143400-37154600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr19:37143600-37148400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
46	chr19:37143600-37148600	ZNF genes & repeats	Lung	lung
47	chr19:37143600-37150400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
48	chr19:37143600-37151000	Strong transcription	Placenta	Placenta
49	chr19:37143600-37152200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
50	chr19:37143600-37156800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links