Variant report

Variant	rs10417106
Chromosome Location	chr19:37223934-37223935
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10408063	0.97[AFR][1000 genomes]
rs10408318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10411150	0.98[AFR][1000 genomes]
rs10413697	0.93[AFR][1000 genomes]
rs10414240	0.97[AFR][1000 genomes]
rs10417344	1.00[AFR][1000 genomes]
rs10418271	0.97[AFR][1000 genomes]
rs10422700	1.00[AFR][1000 genomes]
rs10425382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227813	0.82[AFR][1000 genomes]
rs12459915	0.95[AFR][1000 genomes]
rs12462268	0.97[AFR][1000 genomes]
rs13345382	1.00[AFR][1000 genomes]
rs17468285	0.97[AFR][1000 genomes]
rs28418630	0.84[AFR][1000 genomes]
rs28465595	0.97[AFR][1000 genomes]
rs28472526	0.97[AFR][1000 genomes]
rs28645577	0.90[AFR][1000 genomes]
rs28742010	0.91[AFR][1000 genomes]
rs28818888	0.97[AFR][1000 genomes]
rs2912407	0.85[AFR][1000 genomes]
rs2912418	0.82[AFR][1000 genomes]
rs2967425	0.83[AFR][1000 genomes]
rs2967426	0.90[AFR][1000 genomes]
rs2967428	0.90[AFR][1000 genomes]
rs2967430	0.85[AFR][1000 genomes]
rs35621405	0.90[AFR][1000 genomes]
rs58245911	0.81[AFR][1000 genomes]
rs58880289	1.00[AFR][1000 genomes]
rs59951429	0.92[AFR][1000 genomes]
rs60268308	0.95[AFR][1000 genomes]
rs60615280	0.94[AFR][1000 genomes]
rs6510562	0.97[AFR][1000 genomes]
rs73607078	1.00[AFR][1000 genomes]
rs73609133	0.97[AFR][1000 genomes]
rs73609981	0.92[AFR][1000 genomes]
rs73612010	0.97[AFR][1000 genomes]
rs73612013	1.00[AFR][1000 genomes]
rs73612039	1.00[AFR][1000 genomes]
rs73612043	0.97[AFR][1000 genomes]
rs73612047	1.00[AFR][1000 genomes]
rs73612050	1.00[AFR][1000 genomes]
rs73612052	1.00[AFR][1000 genomes]
rs73615692	0.97[AFR][1000 genomes]
rs73615693	0.89[AFR][1000 genomes]
rs73617803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8104355	0.92[AFR][1000 genomes]
rs8111419	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv470139	chr19:37171201-37264190	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
13	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv911649	chr19:37203249-37257192	ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
15	esv3508979	chr19:37208161-37252433	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
16	esv3508980	chr19:37208161-37252433	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
17	esv3353886	chr19:37220161-37248967	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37194000-37254000	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37194400-37253800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:37194600-37227000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:37194600-37258800	ZNF genes & repeats	Liver	Liver
5	chr19:37197000-37226400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr19:37216200-37226600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
7	chr19:37216200-37228600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
8	chr19:37216800-37225200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr19:37216800-37232400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:37217200-37229000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:37218800-37224600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr19:37220200-37253800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr19:37220800-37235200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:37221400-37224400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr19:37221400-37224400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr19:37222000-37224400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:37222000-37224600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr19:37222600-37224000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr19:37222800-37226000	ZNF genes & repeats	Aorta	Aorta
20	chr19:37223000-37225400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
21	chr19:37223200-37224400	Weak transcription	Left Ventricle	heart
22	chr19:37223200-37224400	Weak transcription	Ovary	ovary
23	chr19:37223200-37224400	Weak transcription	Pancreas	Pancrea
24	chr19:37223400-37224000	Weak transcription	Dnd41	blood
25	chr19:37223400-37224400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr19:37223400-37225400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr19:37223600-37226400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
28	chr19:37223600-37226600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
29	chr19:37223600-37228400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr19:37223800-37226000	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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