Variant report

Variant	rs10411150
Chromosome Location	chr19:37164599-37164600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37158057..37159719-chr19:37162849..37165565,2	MCF-7	breast:

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10408063	0.98[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10408318	0.98[AFR][1000 genomes]
rs10410939	0.90[ASN][1000 genomes]
rs10413697	0.92[AFR][1000 genomes]
rs10413876	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10414240	0.98[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10417106	0.98[AFR][1000 genomes]
rs10417344	0.98[AFR][1000 genomes]
rs10418271	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10422700	0.98[AFR][1000 genomes]
rs10425382	0.98[AFR][1000 genomes]
rs11880022	0.90[ASN][1000 genomes]
rs11880159	0.90[ASN][1000 genomes]
rs1227559	0.90[ASN][1000 genomes]
rs1227561	0.90[ASN][1000 genomes]
rs1227813	0.81[AFR][1000 genomes]
rs12459208	0.90[ASN][1000 genomes]
rs12459218	0.90[ASN][1000 genomes]
rs12459243	0.90[ASN][1000 genomes]
rs12459325	0.90[ASN][1000 genomes]
rs12459377	0.81[ASN][1000 genomes]
rs12459429	0.90[ASN][1000 genomes]
rs12459527	0.90[ASN][1000 genomes]
rs12459808	0.90[ASN][1000 genomes]
rs12459894	0.81[ASN][1000 genomes]
rs12459915	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12459923	0.90[ASN][1000 genomes]
rs12460049	0.90[ASN][1000 genomes]
rs12460354	0.90[ASN][1000 genomes]
rs12460418	0.90[ASN][1000 genomes]
rs12460420	0.90[ASN][1000 genomes]
rs12460430	0.90[ASN][1000 genomes]
rs12460455	0.90[ASN][1000 genomes]
rs12460482	0.90[ASN][1000 genomes]
rs12460729	0.90[ASN][1000 genomes]
rs12460774	0.90[ASN][1000 genomes]
rs12461023	0.90[ASN][1000 genomes]
rs12461264	0.90[ASN][1000 genomes]
rs12461265	0.90[ASN][1000 genomes]
rs12461280	0.90[ASN][1000 genomes]
rs12461436	0.90[ASN][1000 genomes]
rs12461474	0.90[ASN][1000 genomes]
rs12461707	0.90[ASN][1000 genomes]
rs12461721	0.90[ASN][1000 genomes]
rs12461723	0.90[ASN][1000 genomes]
rs12461738	0.90[ASN][1000 genomes]
rs12461954	0.90[ASN][1000 genomes]
rs12461970	0.90[ASN][1000 genomes]
rs12462037	0.90[ASN][1000 genomes]
rs12462268	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12462281	0.90[ASN][1000 genomes]
rs12462325	0.90[ASN][1000 genomes]
rs12462454	0.90[ASN][1000 genomes]
rs12462471	0.81[ASN][1000 genomes]
rs12462635	0.90[ASN][1000 genomes]
rs12462921	0.90[ASN][1000 genomes]
rs12463012	0.81[ASN][1000 genomes]
rs12974130	0.90[ASN][1000 genomes]
rs12974446	0.90[ASN][1000 genomes]
rs13345382	0.98[AFR][1000 genomes]
rs1625762	0.90[ASN][1000 genomes]
rs1673083	0.90[ASN][1000 genomes]
rs16971568	0.90[ASN][1000 genomes]
rs16973489	0.90[ASN][1000 genomes]
rs17468285	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1990964	0.81[ASN][1000 genomes]
rs25419	0.90[ASN][1000 genomes]
rs28398875	0.90[ASN][1000 genomes]
rs28418630	0.82[AFR][1000 genomes]
rs28465595	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28472526	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28645577	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28742010	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28818888	0.98[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2912407	0.84[AFR][1000 genomes]
rs2912418	0.80[AFR][1000 genomes]
rs2967425	0.82[AFR][1000 genomes]
rs2967426	0.88[AFR][1000 genomes]
rs2967428	0.88[AFR][1000 genomes]
rs2967430	0.84[AFR][1000 genomes]
rs34051375	0.90[ASN][1000 genomes]
rs34106502	0.90[ASN][1000 genomes]
rs35621405	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35706444	0.90[ASN][1000 genomes]
rs3859520	0.81[ASN][1000 genomes]
rs491951	0.81[ASN][1000 genomes]
rs500244	0.81[ASN][1000 genomes]
rs58245911	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58880289	0.98[AFR][1000 genomes]
rs59951429	0.90[AFR][1000 genomes]
rs60268308	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60615280	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61750934	0.90[ASN][1000 genomes]
rs6510562	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73607078	0.98[AFR][1000 genomes]
rs73609133	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73609981	0.90[AFR][1000 genomes]
rs73612010	0.95[AFR][1000 genomes]
rs73612013	0.98[AFR][1000 genomes]
rs73612031	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73612039	0.98[AFR][1000 genomes]
rs73612043	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73612047	0.98[AFR][1000 genomes]
rs73612050	0.98[AFR][1000 genomes]
rs73612052	0.98[AFR][1000 genomes]
rs73615692	0.98[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73615693	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73617803	0.92[AFR][1000 genomes]
rs7508258	0.90[ASN][1000 genomes]
rs8104355	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8111419	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv3420176	chr19:37130161-37207917	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv1061250	chr19:37134068-37188771	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a
14	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37158400-37169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr19:37158600-37167400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr19:37158600-37167400	Weak transcription	Psoas Muscle	Psoas
4	chr19:37158600-37168800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr19:37158600-37168800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:37158600-37169000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:37158600-37169000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:37158600-37169000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr19:37158600-37172800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr19:37158600-37177200	Weak transcription	Fetal Kidney	kidney
11	chr19:37158600-37177400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr19:37158600-37177400	Weak transcription	NHDF-Ad	bronchial
13	chr19:37158600-37177800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr19:37158800-37166000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr19:37159000-37177000	Weak transcription	NHLF	lung
16	chr19:37159200-37164600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:37159200-37164600	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr19:37159200-37165600	ZNF genes & repeats	Fetal Brain Female	brain
19	chr19:37159200-37166200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:37159200-37166200	ZNF genes & repeats	Liver	Liver
21	chr19:37159200-37168000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:37159200-37177600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr19:37159400-37177600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr19:37159600-37167000	Weak transcription	HSMM	muscle
25	chr19:37159600-37168800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr19:37159600-37168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr19:37159600-37168800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:37159600-37168800	Weak transcription	HSMMtube	muscle
29	chr19:37159600-37169000	Weak transcription	Placenta	Placenta
30	chr19:37159600-37176200	Weak transcription	Gastric	stomach
31	chr19:37159600-37177400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr19:37159800-37168800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr19:37160000-37177000	Weak transcription	Fetal Heart	heart
34	chr19:37160400-37164600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr19:37161400-37164600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
36	chr19:37161400-37165400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr19:37162000-37166000	ZNF genes & repeats	Brain Germinal Matrix	brain
38	chr19:37162200-37164600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr19:37162200-37164800	ZNF genes & repeats	Ovary	ovary
40	chr19:37162200-37164800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
41	chr19:37162200-37165400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
42	chr19:37162200-37166000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
43	chr19:37162400-37164600	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr19:37162400-37164800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
45	chr19:37162400-37165600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
46	chr19:37162600-37165600	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr19:37162800-37164600	ZNF genes & repeats	Brain Angular Gyrus	brain
48	chr19:37162800-37168800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr19:37163000-37165600	Weak transcription	Fetal Intestine Large	intestine
50	chr19:37163000-37169000	Weak transcription	Right Ventricle	heart

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