Variant report

Variant	rs73609981
Chromosome Location	chr19:37120226-37120227
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10408063	0.89[AFR][1000 genomes]
rs10408318	0.92[AFR][1000 genomes]
rs10411150	0.90[AFR][1000 genomes]
rs10413697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414240	0.89[AFR][1000 genomes]
rs10417106	0.92[AFR][1000 genomes]
rs10417344	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10418271	0.89[AFR][1000 genomes]
rs10422700	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425382	0.92[AFR][1000 genomes]
rs1234513	0.87[AFR][1000 genomes]
rs12459915	0.87[AFR][1000 genomes]
rs12462268	0.89[AFR][1000 genomes]
rs13345382	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17468285	0.89[AFR][1000 genomes]
rs28465595	0.89[AFR][1000 genomes]
rs28472526	0.89[AFR][1000 genomes]
rs28645577	0.82[AFR][1000 genomes]
rs28742010	0.83[AFR][1000 genomes]
rs28818888	0.89[AFR][1000 genomes]
rs2912407	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2912409	1.00[AMR][1000 genomes]
rs2912418	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2945986	1.00[AMR][1000 genomes]
rs2967425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2967426	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2967428	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2967430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2967538	1.00[AMR][1000 genomes]
rs35621405	0.95[AFR][1000 genomes]
rs58880289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59951429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60268308	0.87[AFR][1000 genomes]
rs60615280	0.86[AFR][1000 genomes]
rs6510562	0.89[AFR][1000 genomes]
rs73607078	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73609133	0.89[AFR][1000 genomes]
rs73612010	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612039	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612043	0.89[AFR][1000 genomes]
rs73612047	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612050	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615692	0.89[AFR][1000 genomes]
rs73615693	0.81[AFR][1000 genomes]
rs73617803	0.85[AFR][1000 genomes]
rs8104355	0.83[AFR][1000 genomes]
rs8111419	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37098200-37120400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:37102200-37135200	ZNF genes & repeats	Fetal Brain Female	brain
4	chr19:37104400-37125600	ZNF genes & repeats	Brain Germinal Matrix	brain
5	chr19:37106800-37151000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
7	chr19:37107000-37120400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr19:37107000-37120400	ZNF genes & repeats	Brain Hippocampus Middle	brain
9	chr19:37107000-37125400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:37107000-37134800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:37107000-37152400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr19:37107800-37134600	ZNF genes & repeats	Brain Anterior Caudate	brain
13	chr19:37109200-37120400	ZNF genes & repeats	Dnd41	blood
14	chr19:37110400-37152600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:37112400-37120800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
16	chr19:37112400-37122200	ZNF genes & repeats	Psoas Muscle	Psoas
17	chr19:37115400-37131800	ZNF genes & repeats	Left Ventricle	heart
18	chr19:37116800-37120400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr19:37116800-37120400	ZNF genes & repeats	Brain Angular Gyrus	brain
20	chr19:37117200-37124000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
21	chr19:37117400-37120400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr19:37117400-37124000	ZNF genes & repeats	Colon Smooth Muscle	Colon
23	chr19:37117800-37128400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr19:37119800-37120800	ZNF genes & repeats	Fetal Stomach	stomach
25	chr19:37119800-37122000	Weak transcription	Fetal Heart	heart
26	chr19:37119800-37122000	Weak transcription	Fetal Kidney	kidney
27	chr19:37120000-37120800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr19:37120000-37120800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr19:37120000-37122200	ZNF genes & repeats	Aorta	Aorta
30	chr19:37120200-37120400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr19:37120200-37120800	ZNF genes & repeats	Ovary	ovary

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