Variant report

Variant	rs12463012
Chromosome Location	chr19:37366341-37366342
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10408063	0.90[ASN][1000 genomes]
rs10410939	0.90[ASN][1000 genomes]
rs10411150	0.81[ASN][1000 genomes]
rs10413876	0.90[ASN][1000 genomes]
rs10414240	0.90[ASN][1000 genomes]
rs10418271	0.90[ASN][1000 genomes]
rs1114318	0.84[AMR][1000 genomes]
rs11880022	0.90[ASN][1000 genomes]
rs11880159	0.90[ASN][1000 genomes]
rs1227559	0.90[ASN][1000 genomes]
rs1227561	0.90[ASN][1000 genomes]
rs12459208	0.90[ASN][1000 genomes]
rs12459218	0.90[ASN][1000 genomes]
rs12459243	0.90[ASN][1000 genomes]
rs12459325	0.90[ASN][1000 genomes]
rs12459377	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12459429	0.90[ASN][1000 genomes]
rs12459527	0.90[ASN][1000 genomes]
rs12459808	0.90[ASN][1000 genomes]
rs12459894	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12459915	0.90[ASN][1000 genomes]
rs12460049	0.90[ASN][1000 genomes]
rs12460354	0.90[ASN][1000 genomes]
rs12460418	0.90[ASN][1000 genomes]
rs12460420	0.90[ASN][1000 genomes]
rs12460455	0.90[ASN][1000 genomes]
rs12460482	0.90[ASN][1000 genomes]
rs12460729	0.90[ASN][1000 genomes]
rs12460774	0.90[ASN][1000 genomes]
rs12461023	0.90[ASN][1000 genomes]
rs12461264	0.90[ASN][1000 genomes]
rs12461265	0.90[ASN][1000 genomes]
rs12461280	0.90[ASN][1000 genomes]
rs12461474	0.90[ASN][1000 genomes]
rs12461721	0.90[ASN][1000 genomes]
rs12461738	0.90[ASN][1000 genomes]
rs12461954	0.90[ASN][1000 genomes]
rs12462037	0.90[ASN][1000 genomes]
rs12462268	0.90[ASN][1000 genomes]
rs12462281	0.90[ASN][1000 genomes]
rs12462325	0.90[ASN][1000 genomes]
rs12462454	0.90[ASN][1000 genomes]
rs12462471	0.81[ASN][1000 genomes]
rs12974130	0.90[ASN][1000 genomes]
rs12974446	0.90[ASN][1000 genomes]
rs1625762	0.90[ASN][1000 genomes]
rs1673083	0.90[ASN][1000 genomes]
rs16971568	0.90[ASN][1000 genomes]
rs16971769	0.84[AMR][1000 genomes]
rs16973489	0.90[ASN][1000 genomes]
rs17468285	0.90[ASN][1000 genomes]
rs1990964	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs25419	0.90[ASN][1000 genomes]
rs28465595	0.90[ASN][1000 genomes]
rs28472526	0.90[ASN][1000 genomes]
rs28645577	0.90[ASN][1000 genomes]
rs28742010	0.90[ASN][1000 genomes]
rs28818888	0.90[ASN][1000 genomes]
rs34051375	0.90[ASN][1000 genomes]
rs35621405	0.90[ASN][1000 genomes]
rs35706444	0.90[ASN][1000 genomes]
rs3859520	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs491951	1.00[ASN][1000 genomes]
rs500244	1.00[ASN][1000 genomes]
rs58245911	0.90[ASN][1000 genomes]
rs58571457	0.91[AFR][1000 genomes]
rs60268308	0.90[ASN][1000 genomes]
rs60615280	0.90[ASN][1000 genomes]
rs61750934	0.90[ASN][1000 genomes]
rs6510562	0.90[ASN][1000 genomes]
rs7249016	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7249261	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7251580	1.00[YRI][hapmap]
rs7253894	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs73609133	0.90[ASN][1000 genomes]
rs73612031	0.90[ASN][1000 genomes]
rs73612043	0.90[ASN][1000 genomes]
rs73615692	0.90[ASN][1000 genomes]
rs73615693	0.81[ASN][1000 genomes]
rs7508258	0.90[ASN][1000 genomes]
rs8101749	0.91[AFR][1000 genomes]
rs8104355	0.81[ASN][1000 genomes]
rs8111419	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv458569	chr19:37331614-37412887	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv579462	chr19:37331614-37412887	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37344400-37369400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:37344400-37371600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37344400-37406400	ZNF genes & repeats	Liver	Liver
4	chr19:37344600-37371600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr19:37346400-37404600	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:37346600-37372400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr19:37348800-37372000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
8	chr19:37353400-37405000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:37353600-37371200	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:37357400-37369200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr19:37357800-37371600	ZNF genes & repeats	Brain Hippocampus Middle	brain
12	chr19:37358600-37370800	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr19:37359800-37369200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
14	chr19:37359800-37371000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr19:37359800-37371600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:37360000-37371200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr19:37360000-37373000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr19:37360200-37370600	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr19:37360200-37371000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr19:37360200-37371200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr19:37360200-37372400	ZNF genes & repeats	Brain Substantia Nigra	brain
22	chr19:37360600-37371000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr19:37361400-37369200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr19:37361400-37371400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr19:37361800-37369400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
26	chr19:37361800-37369400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
27	chr19:37361800-37371200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:37361800-37371200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
29	chr19:37362000-37369200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:37362400-37371000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr19:37362600-37371000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr19:37362800-37371000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr19:37362800-37371600	ZNF genes & repeats	Brain Germinal Matrix	brain
34	chr19:37363000-37369200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
35	chr19:37363000-37369200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr19:37363000-37369400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
37	chr19:37363000-37371600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
38	chr19:37363000-37372000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
39	chr19:37363200-37366600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:37363200-37369200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
41	chr19:37363200-37369600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
42	chr19:37363200-37371600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
43	chr19:37363400-37369000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
44	chr19:37363400-37369200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
45	chr19:37363600-37367800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr19:37364200-37369000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
47	chr19:37364200-37371000	ZNF genes & repeats	Colon Smooth Muscle	Colon
48	chr19:37364400-37369200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
49	chr19:37364400-37369200	ZNF genes & repeats	Brain Angular Gyrus	brain
50	chr19:37364400-37369800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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