Variant report

Variant	rs506594
Chromosome Location	chr11:64162897-64162898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRMT112-2	chr11:64162677-64163303	XLOC_009463

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10897491	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10897504	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11231787	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11231789	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11601686	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11603861	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11605289	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1320628	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4930168	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4930175	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4963222	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963223	0.88[EUR][1000 genomes]
rs508326	0.95[EUR][1000 genomes]
rs7127926	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72927984	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs750830	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs750832	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7933523	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
2	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
3	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64150600-64163000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:64153800-64163200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:64154000-64167600	Weak transcription	Right Atrium	heart
4	chr11:64159200-64163200	Weak transcription	Primary B cells from cord blood	blood
5	chr11:64159400-64163000	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:64159400-64163200	Weak transcription	Right Ventricle	heart
7	chr11:64159600-64163000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:64159600-64163200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:64159600-64163200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:64159600-64163200	Weak transcription	Spleen	Spleen
11	chr11:64160400-64163000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:64160600-64163000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:64161600-64164000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr11:64161600-64164200	Enhancers	Fetal Thymus	thymus
15	chr11:64161600-64164200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr11:64161800-64164800	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:64162000-64163800	Enhancers	Liver	Liver
18	chr11:64162000-64163800	Enhancers	Thymus	Thymus
19	chr11:64162000-64164200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:64162000-64164200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:64162000-64164400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:64162000-64164400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:64162000-64164800	Enhancers	Fetal Muscle Leg	muscle
24	chr11:64162200-64163200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr11:64162200-64163400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:64162200-64164200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr11:64162400-64163000	Weak transcription	Fetal Intestine Large	intestine
28	chr11:64162400-64164400	Enhancers	Fetal Stomach	stomach
29	chr11:64162600-64163400	Enhancers	Brain Substantia Nigra	brain
30	chr11:64162600-64163400	Enhancers	Colonic Mucosa	Colon
31	chr11:64162600-64163400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr11:64162600-64164000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:64162600-64164200	Enhancers	Adipose Nuclei	Adipose
34	chr11:64162600-64164400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:64162600-64164400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:64162600-64164400	Enhancers	Placenta	Placenta
37	chr11:64162800-64163000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:64162800-64163800	Enhancers	H9 Cell Line	embryonic stem cell
39	chr11:64162800-64164000	Enhancers	Fetal Intestine Small	intestine

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