Variant report

Variant	rs11231787
Chromosome Location	chr11:64179813-64179814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10897491	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10897504	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11231789	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11601686	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11603861	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11605289	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1320628	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs488909	0.82[EUR][1000 genomes]
rs4930168	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4930175	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4963222	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4963223	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs506594	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs508326	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7127926	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72927984	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs750830	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs750832	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7933523	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64174200-64182200	Weak transcription	Spleen	Spleen
2	chr11:64174400-64182400	Weak transcription	Right Ventricle	heart
3	chr11:64174400-64182600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:64174400-64182600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:64177000-64182400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:64177400-64182600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:64178000-64182400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:64178000-64184200	Weak transcription	Right Atrium	heart
9	chr11:64178200-64182400	Weak transcription	Fetal Lung	lung
10	chr11:64178200-64182600	Weak transcription	Fetal Thymus	thymus
11	chr11:64178400-64182400	Weak transcription	Fetal Heart	heart
12	chr11:64178400-64182400	Weak transcription	Fetal Stomach	stomach
13	chr11:64178800-64180800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:64179000-64182200	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:64179000-64182400	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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