Variant report

Variant	rs4930168
Chromosome Location	chr11:64173058-64173059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64166187..64170044-chr11:64170239..64173432,3	K562	blood:
2	chr11:64087500..64089576-chr11:64172197..64174261,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10897491	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10897504	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11231787	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11231789	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11601686	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11603861	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11605289	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1320628	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs488909	0.82[EUR][1000 genomes]
rs4930175	0.82[GIH][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4963222	1.00[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4963223	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs506594	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs508326	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7127926	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72927984	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs750830	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs750832	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7933523	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64168000-64173400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:64168400-64173600	Weak transcription	Spleen	Spleen
3	chr11:64170800-64173600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:64171000-64175200	Weak transcription	Fetal Brain Male	brain
5	chr11:64172000-64173600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:64172400-64173200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:64172400-64174400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:64172600-64176000	Enhancers	Placenta	Placenta
9	chr11:64172800-64174400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:64172800-64174400	Enhancers	Rectal Smooth Muscle	rectum
11	chr11:64172800-64174600	Enhancers	Fetal Kidney	kidney
12	chr11:64172800-64175000	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:64172800-64175000	Enhancers	Fetal Stomach	stomach
14	chr11:64172800-64175200	Enhancers	Fetal Intestine Large	intestine
15	chr11:64172800-64175200	Enhancers	Fetal Muscle Leg	muscle
16	chr11:64172800-64175600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:64173000-64174600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:64173000-64175400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:64173000-64175600	Enhancers	Fetal Intestine Small	intestine
20	chr11:64173000-64175600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:64173000-64176000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:64173000-64178800	Enhancers	Placenta Amnion	Placenta Amnion

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