Variant report

Variant	rs488909
Chromosome Location	chr11:64207488-64207489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10897504	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11231787	0.82[EUR][1000 genomes]
rs11231789	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11601686	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11603861	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11605289	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1320628	0.82[EUR][1000 genomes]
rs4930168	0.82[EUR][1000 genomes]
rs4930175	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4963222	0.84[EUR][1000 genomes]
rs4963223	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs508326	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs570024	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs571866	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs596308	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs668245	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7127926	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72927984	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976459	chr11:64183936-64208134	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64203600-64208400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:64203800-64208400	Enhancers	Placenta	Placenta
3	chr11:64204200-64208600	Weak transcription	Fetal Brain Female	brain
4	chr11:64204600-64208400	Weak transcription	Fetal Brain Male	brain
5	chr11:64204800-64210000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:64205400-64208200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:64205600-64209000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:64206400-64207800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:64206800-64208000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:64206800-64208000	Enhancers	GM12878-XiMat	blood
11	chr11:64207200-64207600	Weak transcription	Spleen	Spleen
12	chr11:64207200-64208800	Weak transcription	Adipose Nuclei	Adipose
13	chr11:64207200-64209200	Weak transcription	Primary B cells from cord blood	blood
14	chr11:64207200-64209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:64207400-64207800	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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