Variant report

Variant	rs570024
Chromosome Location	chr11:64215032-64215033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64206783..64209244-chr11:64213873..64216195,3	K562	blood:
2	chr11:64212659..64215457-chr11:64215621..64217376,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181908	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10897504	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs11231789	0.87[EUR][1000 genomes]
rs11601686	0.82[EUR][1000 genomes]
rs11603861	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs11605289	0.87[EUR][1000 genomes]
rs488909	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4930175	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs4963222	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs4963223	0.91[CEU][hapmap]
rs571866	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs596308	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591849	0.82[CEU][hapmap]
rs668245	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127926	0.82[EUR][1000 genomes]
rs72927984	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64208400-64215800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:64209800-64215400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:64209800-64215800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:64210600-64216200	Weak transcription	Right Atrium	heart
5	chr11:64210800-64215200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:64211600-64215200	Weak transcription	Fetal Brain Male	brain
7	chr11:64211800-64215200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:64212600-64215200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:64212800-64215200	Weak transcription	Placenta	Placenta
10	chr11:64212800-64216000	Weak transcription	Spleen	Spleen
11	chr11:64213000-64215200	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:64213000-64215800	Weak transcription	Brain Substantia Nigra	brain
13	chr11:64213400-64215200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:64215000-64215200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:64215000-64215200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:64215000-64215200	Enhancers	Liver	Liver
17	chr11:64215000-64215200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr11:64215000-64215200	Enhancers	Fetal Brain Female	brain
19	chr11:64215000-64215200	Enhancers	HSMMtube	muscle
20	chr11:64215000-64215400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:64215000-64215400	Enhancers	Primary B cells from cord blood	blood
22	chr11:64215000-64215400	Enhancers	Brain Germinal Matrix	brain
23	chr11:64215000-64215600	Enhancers	GM12878-XiMat	blood
24	chr11:64215000-64218200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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