Variant report
| Variant | rs510242 |
|---|---|
| Chromosome Location | chr10:27554173-27554174 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:27528592..27532608-chr10:27549768..27554222,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000107897 | Chromatin interaction |
| ENSG00000262412 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs1148169 | 0.83[ASN][1000 genomes] |
| rs1753385 | 0.83[ASN][1000 genomes] |
| rs1831186 | 0.84[ASN][1000 genomes] |
| rs2368221 | 0.84[ASN][1000 genomes] |
| rs2483499 | 0.81[ASN][1000 genomes] |
| rs2797080 | 0.83[ASN][1000 genomes] |
| rs2800407 | 0.83[ASN][1000 genomes] |
| rs630317 | 0.84[ASN][1000 genomes] |
| rs693965 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422253 | chr10:27431366-27575370 | Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | esv3337781 | chr10:27472216-27666703 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 3 | nsv8614 | chr10:27504487-27828406 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs510242 | ARMC4P1 | cis | Esophagus Muscularis | GTEx |
| rs510242 | RP11-748L13.6 | cis | Thyroid | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
