Variant report
| Variant | rs1753385 |
|---|---|
| Chromosome Location | chr10:27563971-27563972 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1144509 | 0.88[ASN][1000 genomes] |
| rs1148169 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1831186 | 0.99[ASN][1000 genomes] |
| rs1831187 | 0.85[ASN][1000 genomes] |
| rs1831188 | 0.85[ASN][1000 genomes] |
| rs2104670 | 0.95[ASN][1000 genomes] |
| rs2104671 | 0.95[ASN][1000 genomes] |
| rs2368221 | 0.99[ASN][1000 genomes] |
| rs2483499 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2488368 | 0.95[ASN][1000 genomes] |
| rs2488369 | 0.95[ASN][1000 genomes] |
| rs2770200 | 0.84[ASN][1000 genomes] |
| rs2797080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2800399 | 0.81[ASN][1000 genomes] |
| rs2800407 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35209475 | 1.00[AFR][1000 genomes] |
| rs480738 | 0.80[ASN][1000 genomes] |
| rs484172 | 0.80[ASN][1000 genomes] |
| rs501495 | 0.81[ASN][1000 genomes] |
| rs510242 | 0.83[ASN][1000 genomes] |
| rs527192 | 0.92[ASN][1000 genomes] |
| rs534226 | 0.81[ASN][1000 genomes] |
| rs559839 | 0.80[ASN][1000 genomes] |
| rs576161 | 0.92[ASN][1000 genomes] |
| rs604705 | 0.92[ASN][1000 genomes] |
| rs618050 | 0.92[ASN][1000 genomes] |
| rs623380 | 0.88[ASN][1000 genomes] |
| rs630317 | 0.99[ASN][1000 genomes] |
| rs640284 | 0.89[ASN][1000 genomes] |
| rs642428 | 0.80[ASN][1000 genomes] |
| rs642430 | 0.80[ASN][1000 genomes] |
| rs693965 | 0.96[ASN][1000 genomes] |
| rs944909 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422253 | chr10:27431366-27575370 | Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | esv3337781 | chr10:27472216-27666703 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 3 | nsv8614 | chr10:27504487-27828406 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:27556400-27569400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
