Variant report

Variant	rs2800407
Chromosome Location	chr10:27549288-27549289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1144509	0.89[ASN][1000 genomes]
rs1148169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1753385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1780090	0.80[ASN][1000 genomes]
rs1780093	0.80[ASN][1000 genomes]
rs1831186	0.98[ASN][1000 genomes]
rs1831187	0.86[ASN][1000 genomes]
rs1831188	0.86[ASN][1000 genomes]
rs2104670	0.95[ASN][1000 genomes]
rs2104671	0.95[ASN][1000 genomes]
rs2368221	0.98[ASN][1000 genomes]
rs2483499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2488368	0.95[ASN][1000 genomes]
rs2488369	0.95[ASN][1000 genomes]
rs2770200	0.85[ASN][1000 genomes]
rs2780669	0.80[ASN][1000 genomes]
rs2780670	0.80[ASN][1000 genomes]
rs2780671	0.80[ASN][1000 genomes]
rs2780677	0.80[ASN][1000 genomes]
rs2797079	0.80[ASN][1000 genomes]
rs2797080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800391	0.80[ASN][1000 genomes]
rs2800393	0.80[ASN][1000 genomes]
rs2800394	0.80[ASN][1000 genomes]
rs2800395	0.80[ASN][1000 genomes]
rs2800398	0.80[ASN][1000 genomes]
rs2800399	0.82[ASN][1000 genomes]
rs2800402	0.80[ASN][1000 genomes]
rs35209475	1.00[AFR][1000 genomes]
rs480738	0.81[ASN][1000 genomes]
rs484172	0.81[ASN][1000 genomes]
rs501495	0.82[ASN][1000 genomes]
rs510242	0.83[ASN][1000 genomes]
rs527192	0.93[ASN][1000 genomes]
rs534226	0.82[ASN][1000 genomes]
rs559839	0.81[ASN][1000 genomes]
rs576161	0.93[ASN][1000 genomes]
rs604705	0.93[ASN][1000 genomes]
rs618050	0.93[ASN][1000 genomes]
rs623380	0.88[ASN][1000 genomes]
rs624106	0.80[ASN][1000 genomes]
rs630317	0.98[ASN][1000 genomes]
rs640284	0.90[ASN][1000 genomes]
rs642428	0.81[ASN][1000 genomes]
rs642430	0.81[ASN][1000 genomes]
rs693965	0.95[ASN][1000 genomes]
rs788215	0.80[ASN][1000 genomes]
rs788216	0.80[ASN][1000 genomes]
rs7914155	0.80[ASN][1000 genomes]
rs944909	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2800407	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27549200-27549400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links