Variant report

Variant	rs518818
Chromosome Location	chr2:141394014-141394015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs473512	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs482286	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs488576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs503560	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs505379	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs524089	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs532871	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs570595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs574405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs794039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583193	chr2:141365171-141415043	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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