Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11265508	1.00[MEX][hapmap]
rs12059277	1.00[MEX][hapmap]
rs12065420	1.00[MEX][hapmap]
rs12074019	1.00[MEX][hapmap]
rs12090411	1.00[MEX][hapmap]
rs12094026	1.00[MEX][hapmap]
rs12095453	1.00[MEX][hapmap]
rs12095682	1.00[MEX][hapmap]
rs16832317	1.00[MEX][hapmap]
rs16832344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832484	1.00[MEX][hapmap]
rs2176874	1.00[EUR][1000 genomes]
rs35918317	1.00[MEX][hapmap]
rs492484	0.90[EUR][1000 genomes]
rs497896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522606	0.90[EUR][1000 genomes]
rs524276	0.90[EUR][1000 genomes]
rs526030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs527342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs544518	0.90[ASN][1000 genomes]
rs555421	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428532	chr1:160671125-160767708	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160718400-160731000	Weak transcription	Esophagus	oesophagus
2	chr1:160719400-160731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:160720800-160731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:160722000-160736400	Weak transcription	Primary T cells from cord blood	blood
5	chr1:160723000-160730000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr1:160724400-160730000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:160727800-160728800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:160728000-160728400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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