Variant report
| Variant | rs525075 |
|---|---|
| Chromosome Location | chr1:166761375-166761376 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr1:166761208-166761522 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:166759482..166762250-chr1:166763542..166766296,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CNN2P10 | TF binding region |
| ENSG00000232223 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs499528 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs514494 | 0.83[YRI][hapmap] |
| rs529243 | 1.00[AMR][1000 genomes] |
| rs542163 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs555321 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs564886 | 0.86[AFR][1000 genomes] |
| rs565810 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs566924 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs572523 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs577003 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs577172 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs577252 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs577965 | 0.83[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs580312 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv519275 | chr1:166758542-166767050 | Enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
