Variant report

Variant	rs577172
Chromosome Location	chr1:166756308-166756309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs499528	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs525075	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs529243	1.00[AMR][1000 genomes]
rs542163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs555321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564886	0.96[AFR][1000 genomes]
rs565810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs566924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577003	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3375449	chr1:166754628-166758990	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166754400-166756400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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