Variant report

Variant	rs577003
Chromosome Location	chr1:166746893-166746894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs499528	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs525075	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs529243	1.00[AMR][1000 genomes]
rs542163	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs555321	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564886	0.86[AFR][1000 genomes]
rs565810	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs566924	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs577965	1.00[ASW][hapmap];1.00[MKK][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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