Variant report

Variant	rs527368013
Chromosome Location	chr6:149769960-149769961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149769726..149773853-chr6:149775332..149778151,3	K562	blood:
2	chr6:149767445..149770252-chr6:149772541..149774258,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZC3H12D-9	chr6:149769570-149770516	NONHSAT115500

Variant related genes	Relation type
ENSG00000178199	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3355637	chr6:149769659-149774457	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149753400-149770000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:149762600-149770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:149762800-149771000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:149763200-149770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149763200-149771000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:149763200-149771400	Weak transcription	Pancreas	Pancrea
7	chr6:149764800-149771400	Weak transcription	Spleen	Spleen
8	chr6:149765200-149771400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:149766000-149771400	Weak transcription	Right Atrium	heart
10	chr6:149766200-149771000	Weak transcription	GM12878-XiMat	blood
11	chr6:149766200-149771200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:149766600-149773000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:149766800-149771000	Weak transcription	Fetal Heart	heart
14	chr6:149766800-149771400	Weak transcription	Left Ventricle	heart
15	chr6:149766800-149771600	Weak transcription	Lung	lung
16	chr6:149767400-149772800	Weak transcription	HepG2	liver
17	chr6:149768400-149771600	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:149768400-149779400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:149768600-149771600	Weak transcription	Gastric	stomach
20	chr6:149769600-149770000	Strong transcription	Primary B cells from cord blood	blood
21	chr6:149769600-149771400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:149769600-149782800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr6:149769600-149787200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:149769800-149770000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr6:149769800-149770200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr6:149769800-149770400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr6:149769800-149771400	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr6:149769800-149779800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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