Variant report

Variant	rs528920903
Chromosome Location	chr9:21183346-21183347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:21183200-21183350	HRPEpiC	eye:	n/a	chr9:21183259-21183277
2	RAD21	chr9:21183121-21183380	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr9:21183220-21183370	GM12874	blood:	n/a	chr9:21183259-21183277
4	CTCF	chr9:21183200-21183350	HMEC	breast:	n/a	chr9:21183259-21183277
5	CTCF	chr9:21183200-21183350	HUVEC	blood vessel:	n/a	chr9:21183259-21183277
6	CTCF	chr9:21183121-21183361	NHEK	skin:	n/a	chr9:21183259-21183277
7	CTCF	chr9:21183200-21183350	AG04450	lung:	n/a	chr9:21183259-21183277
8	CTCF	chr9:21183142-21183363	A549	lung:	n/a	chr9:21183259-21183277
9	RAD21	chr9:21183059-21183442	HepG2	liver:	n/a	n/a
10	CTCF	chr9:21183220-21183370	HEK293	kidney:	n/a	chr9:21183259-21183277
11	CTCF	chr9:21183149-21183362	Pancreas_OC	pancreas:	n/a	chr9:21183259-21183277
12	RAD21	chr9:21183159-21183374	SK-N-SH_RA	brain:	n/a	n/a
13	CTCF	chr9:21183200-21183350	HBMEC	blood vessel:	n/a	chr9:21183259-21183277
14	CTCF	chr9:21183123-21183390	Spleen_OC	spleen:	n/a	chr9:21183259-21183277
15	CTCF	chr9:21183260-21183410	GM12872	blood:	n/a	n/a
16	IRF4	chr9:21183282-21183789	GM12878	blood:	n/a	n/a
17	CTCF	chr9:21183127-21183381	LNCaP	prostate:	n/a	chr9:21183259-21183277
18	CTCF	chr9:21183320-21183470	HMEC	breast:	n/a	n/a
19	CTCF	chr9:21183300-21183450	NHDF-neo	bronchial:	n/a	n/a
20	CTCF	chr9:21183200-21183350	HPAF	blood vessel:	n/a	chr9:21183259-21183277
21	CTCF	chr9:21183200-21183350	HA-sp	spinal cord:	n/a	chr9:21183259-21183277
22	CTCF	chr9:21183150-21183374	Lung_OC	lung:	n/a	chr9:21183259-21183277
23	CTCF	chr9:21183300-21183450	HAc	cerebellar:	n/a	n/a
24	CTCF	chr9:21183102-21183389	HepG2	liver:	n/a	chr9:21183259-21183277
25	CTCF	chr9:21183200-21183350	GM06990	blood:	n/a	chr9:21183259-21183277
26	CTCF	chr9:21183160-21183450	HCT-116	colon:	n/a	chr9:21183259-21183277
27	CEBPB	chr9:21183206-21183372	A549	lung:	n/a	n/a
28	CTCF	chr9:21183020-21183468	HCT-116	colon:	n/a	chr9:21183259-21183277
29	CTCF	chr9:21183130-21183389	GM10248	blood:	n/a	chr9:21183259-21183277
30	CTCF	chr9:21183200-21183350	AoAF	blood vessel:	n/a	chr9:21183259-21183277
31	ZNF143	chr9:21183118-21183405	GM12878	blood:	n/a	n/a
32	CTCF	chr9:21183200-21183350	BJ	skin:	n/a	chr9:21183259-21183277
33	CTCF	chr9:21183300-21183450	RPTEC	kidney:	n/a	n/a
34	CTCF	chr9:21183143-21183370	HepG2	liver:	n/a	chr9:21183259-21183277
35	CTCF	chr9:21183136-21183386	LNCaP	prostate:	n/a	chr9:21183259-21183277
36	CTCF	chr9:21183300-21183450	HRPEpiC	eye:	n/a	n/a
37	RAD21	chr9:21183106-21183414	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr9:21183320-21183470	BE2_C	brain:	n/a	n/a
39	RAD21	chr9:21183017-21183515	HCT-116	colon:	n/a	n/a
40	CTCF	chr9:21183115-21183388	Medullo	brain:	n/a	chr9:21183259-21183277
41	CTCF	chr9:21183200-21183350	AG10803	skin:	n/a	chr9:21183259-21183277
42	CTCF	chr9:21183200-21183350	NHEK	skin:	n/a	chr9:21183259-21183277
43	CTCF	chr9:21183200-21183350	GM12865	blood:	n/a	chr9:21183259-21183277
44	CTCF	chr9:21183200-21183350	HFF-Myc	foreskin:	n/a	chr9:21183259-21183277
45	CTCF	chr9:21183200-21183350	HRE	kidney:	n/a	chr9:21183259-21183277
46	CTCF	chr9:21183200-21183350	HMF	breast:	n/a	chr9:21183259-21183277
47	CTCF	chr9:21183200-21183350	SK-N-SH_RA	brain:	n/a	chr9:21183259-21183277
48	CTCF	chr9:21183134-21183365	GM20000	blood:	n/a	chr9:21183259-21183277
49	CTCF	chr9:21183122-21183350	GM12892	blood:	n/a	chr9:21183259-21183277
50	CTCF	chr9:21183131-21183352	SK-N-SH_RA	brain:	n/a	chr9:21183259-21183277

Variant related genes	Relation type
IFNWP15	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv466293	chr9:21029330-21199680	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv613752	chr9:21029330-21199680	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv892735	chr9:21157373-21242161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv968599	chr9:21166047-21239960	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv613755	chr9:21170364-21216028	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1016978	chr9:21171267-21214877	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1022579	chr9:21178517-21228248	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv2757324	chr9:21181454-21196515	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2759678	chr9:21181454-21196515	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1018561	chr9:21181454-21228248	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	esv3325686	chr9:21182087-21194435	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21182800-21184000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:21183000-21183400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:21183000-21183400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:21183200-21184000	Enhancers	Primary monocytes fromperipheralblood	blood

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