Variant report

Variant	rs529181
Chromosome Location	chr11:77506695-77506696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11237265	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11820337	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12225188	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12418335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1793335	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1793340	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2186562	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145700	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs501153	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55190	0.85[ASN][1000 genomes]
rs567814	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs616354	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs618535	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs634477	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs648842	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs650636	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs665363	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs681411	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs687615	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7111625	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7121559	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7924567	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7932547	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7941302	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7949468	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
2	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:77475400-77522000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:77475400-77529000	Weak transcription	NHLF	lung
5	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:77475600-77511600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:77475600-77511600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:77475800-77510400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:77475800-77522000	Weak transcription	Hela-S3	cervix
10	chr11:77482600-77509800	Weak transcription	Adipose Nuclei	Adipose
11	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
12	chr11:77487400-77522000	Weak transcription	Placenta	Placenta
13	chr11:77489800-77511600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:77491400-77517600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:77495800-77528200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:77498800-77510200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:77499000-77525600	Weak transcription	HMEC	breast
19	chr11:77499200-77511600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:77499200-77513800	Weak transcription	NHEK	skin
21	chr11:77500000-77511400	Weak transcription	Fetal Heart	heart
22	chr11:77500400-77512200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:77500800-77511600	Weak transcription	Brain Anterior Caudate	brain
24	chr11:77500800-77511600	Weak transcription	Psoas Muscle	Psoas
25	chr11:77501200-77511400	Weak transcription	Spleen	Spleen
26	chr11:77501200-77525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:77501400-77521600	Weak transcription	Fetal Kidney	kidney
28	chr11:77501400-77526800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:77501600-77511000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:77502000-77516800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:77502200-77511000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:77502400-77515200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:77503400-77525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:77503600-77509800	Weak transcription	Thymus	Thymus
35	chr11:77503600-77511000	Weak transcription	Gastric	stomach
36	chr11:77503600-77511200	Weak transcription	Esophagus	oesophagus
37	chr11:77503600-77511600	Weak transcription	Lung	lung
38	chr11:77503600-77525000	Weak transcription	Ovary	ovary
39	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
40	chr11:77503800-77521200	Weak transcription	Fetal Thymus	thymus
41	chr11:77503800-77525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:77504000-77508200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:77504000-77521800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:77504000-77524400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr11:77504200-77510200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:77504400-77506800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:77504400-77510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:77504600-77510400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:77504800-77508600	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr11:77504800-77509200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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