Variant report

Variant	rs618535
Chromosome Location	chr11:77525203-77525204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77520152..77525474-chr11:77528362..77532820,9	MCF-7	breast:
2	chr11:77521920..77524304-chr11:77525173..77528253,3	MCF-7	breast:
3	chr11:77523579..77527566-chr11:77528400..77532529,6	K562	blood:

Variant related genes	Relation type
ENSG00000087884	Chromatin interaction
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11237265	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11820337	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12225188	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12417115	0.80[ASN][1000 genomes]
rs12418335	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1793335	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1793340	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2186562	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653530	0.80[ASN][1000 genomes]
rs4145700	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs501153	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs529181	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55190	0.84[ASN][1000 genomes]
rs567814	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs616354	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs634477	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs648842	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs650636	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665363	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs681411	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs687615	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7111625	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7121559	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7924567	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7932547	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7941302	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7949468	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv975952	chr11:77523566-77526029	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
2	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:77475400-77529000	Weak transcription	NHLF	lung
4	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
6	chr11:77495800-77528200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:77499000-77525600	Weak transcription	HMEC	breast
9	chr11:77501200-77525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:77501400-77526800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:77503400-77525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
13	chr11:77503800-77525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:77505000-77528400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:77505400-77525800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:77506800-77528200	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:77508000-77527800	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:77509400-77528800	Weak transcription	Brain Germinal Matrix	brain
19	chr11:77509800-77530000	Weak transcription	NH-A	brain
20	chr11:77511400-77526000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:77512000-77525800	Weak transcription	NHDF-Ad	bronchial
22	chr11:77512000-77529600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:77512200-77529200	Weak transcription	Fetal Brain Female	brain
24	chr11:77512400-77525400	Weak transcription	Psoas Muscle	Psoas
25	chr11:77512400-77530200	Weak transcription	Esophagus	oesophagus
26	chr11:77512400-77530600	Weak transcription	Lung	lung
27	chr11:77512600-77527000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:77512600-77530600	Weak transcription	Spleen	Spleen
29	chr11:77512800-77529800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:77512800-77530400	Weak transcription	Gastric	stomach
31	chr11:77513200-77529400	Weak transcription	Small Intestine	intestine
32	chr11:77514400-77526000	Weak transcription	NHEK	skin
33	chr11:77515400-77530000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:77516600-77530200	Weak transcription	HSMM	muscle
35	chr11:77517200-77529200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:77518400-77527000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:77518400-77528400	Weak transcription	Osteobl	bone
38	chr11:77518400-77529200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:77518600-77525400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:77518600-77525800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:77518600-77530000	Weak transcription	Brain Substantia Nigra	brain
42	chr11:77518800-77526400	Weak transcription	Brain Angular Gyrus	brain
43	chr11:77518800-77530000	Weak transcription	Colonic Mucosa	Colon
44	chr11:77519000-77527200	Weak transcription	HepG2	liver
45	chr11:77519000-77529400	Weak transcription	HUVEC	blood vessel
46	chr11:77519000-77530000	Weak transcription	Stomach Mucosa	stomach
47	chr11:77520000-77530000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:77520200-77528800	Weak transcription	Fetal Brain Male	brain
49	chr11:77521200-77529800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:77521400-77525400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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