Variant report

Variant	rs634477
Chromosome Location	chr11:77559011-77559012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11237265	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11820337	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12225188	0.83[EUR][1000 genomes]
rs12418335	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1793335	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1793340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186562	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4145700	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs501153	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs529181	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55190	0.80[ASN][1000 genomes]
rs567814	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs616354	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs618535	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs648842	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs650636	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs665363	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs681411	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs687615	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111625	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7115444	0.81[ASN][1000 genomes]
rs7117813	0.81[ASN][1000 genomes]
rs7121559	0.83[EUR][1000 genomes]
rs7924567	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7932547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7941302	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7949468	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77533400-77565600	Weak transcription	Gastric	stomach
2	chr11:77533400-77565600	Weak transcription	Pancreas	Pancrea
3	chr11:77535400-77565600	Weak transcription	HepG2	liver
4	chr11:77544600-77564400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:77544600-77565400	Weak transcription	Spleen	Spleen
6	chr11:77544800-77564400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:77544800-77565400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:77547200-77565800	Weak transcription	Fetal Heart	heart
9	chr11:77548800-77582800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:77550000-77565600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:77550800-77564000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:77550800-77565400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:77551400-77565400	Weak transcription	Fetal Thymus	thymus
14	chr11:77552000-77560400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:77552000-77562600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:77552200-77562800	Strong transcription	Liver	Liver
17	chr11:77552200-77563000	Strong transcription	Left Ventricle	heart
18	chr11:77552200-77563600	Strong transcription	Adipose Nuclei	Adipose
19	chr11:77552200-77565800	Weak transcription	NHLF	lung
20	chr11:77552600-77564400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:77552600-77565400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:77552600-77565400	Weak transcription	Thymus	Thymus
23	chr11:77552800-77562200	Weak transcription	Small Intestine	intestine
24	chr11:77553000-77565000	Weak transcription	Right Ventricle	heart
25	chr11:77553000-77565600	Weak transcription	Aorta	Aorta
26	chr11:77553200-77565600	Weak transcription	Psoas Muscle	Psoas
27	chr11:77553800-77565400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:77554000-77565400	Weak transcription	NH-A	brain
29	chr11:77554000-77565600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:77554600-77563000	Weak transcription	NHDF-Ad	bronchial
31	chr11:77554800-77565600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:77555000-77564400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:77555200-77559200	Strong transcription	Colon Smooth Muscle	Colon
34	chr11:77555200-77565400	Weak transcription	Brain Angular Gyrus	brain
35	chr11:77555200-77565600	Weak transcription	Primary B cells from cord blood	blood
36	chr11:77555400-77563000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:77555600-77564400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:77555800-77559200	Strong transcription	Fetal Lung	lung
39	chr11:77555800-77562400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:77555800-77562400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:77555800-77562800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:77555800-77564400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:77555800-77565400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr11:77555800-77565400	Weak transcription	Lung	lung
45	chr11:77555800-77565600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:77556000-77560600	Strong transcription	Fetal Muscle Leg	muscle
47	chr11:77556000-77565600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:77556200-77562400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:77556200-77564000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:77556200-77565400	Weak transcription	Placenta	Placenta

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