Variant report

Variant	rs529777081
Chromosome Location	chr10:26855993-26855994
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26854569..26856089-chrX:118738967..118740548,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186416	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv550229	chr10:26848206-26889823	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv971873	chr10:26850516-26870913	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3332234	chr10:26853285-26881775	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3441332	chr10:26854971-26857519	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3435900	chr10:26855246-26857194	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26834800-26858400	Strong transcription	Dnd41	blood
2	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:26846000-26859600	Strong transcription	Primary B cells from cord blood	blood
8	chr10:26846200-26859000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:26846400-26860800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:26846400-26861600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:26846600-26858200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:26846600-26858400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:26846600-26859600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:26846600-26860800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:26846800-26859400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:26846800-26861200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:26847600-26857400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:26848200-26861000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
21	chr10:26848800-26857800	Strong transcription	Liver	Liver
22	chr10:26849000-26857600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:26849000-26859000	Strong transcription	GM12878-XiMat	blood
24	chr10:26849000-26860600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:26853400-26856600	Strong transcription	Spleen	Spleen
26	chr10:26854000-26860800	Strong transcription	Thymus	Thymus
27	chr10:26854600-26860200	Strong transcription	Primary T cells from cord blood	blood
28	chr10:26854800-26856400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:26855000-26859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:26855200-26856000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:26855200-26856400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
32	chr10:26855200-26856800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr10:26855400-26856000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr10:26855400-26856200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:26855400-26856200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:26855400-26856200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:26855400-26856400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:26855400-26856600	Active TSS	H1 Cell Line	embryonic stem cell
39	chr10:26855400-26856600	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr10:26855400-26856600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
41	chr10:26855400-26856800	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr10:26855400-26860000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:26855600-26856000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:26855600-26856000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:26855600-26856000	Genic enhancers	Adipose Nuclei	Adipose
46	chr10:26855600-26856000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr10:26855600-26856000	Active TSS	Fetal Kidney	kidney
48	chr10:26855600-26856000	Bivalent Enhancer	Left Ventricle	heart
49	chr10:26855600-26856200	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr10:26855600-26856200	Bivalent/Poised TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links