Variant report

Variant	rs530458314
Chromosome Location	chr6:2283824-2283825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WRNIP1-2	chr6:2283733-2284008	ENSG00000250903
2	lnc-WRNIP1-2	chr6:2283733-2283892	XLOC_005126
3	lnc-WRNIP1-2	chr6:2283733-2284008	XLOC_005126
4	lnc-WRNIP1-2	chr6:2283733-2284069	XLOC_005126
5	lnc-WRNIP1-2	chr6:2283733-2283997	XLOC_005126
6	lnc-WRNIP1-2	chr6:2283733-2283997	XLOC_005126
7	lnc-WRNIP1-2	chr6:2283767-2283997	NONHSAT106637

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv1025814	chr6:2064629-2308518	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv538098	chr6:2064629-2308518	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv1030181	chr6:2071210-2308657	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv538099	chr6:2071210-2308657	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
8	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
9	nsv1022166	chr6:2199666-2320800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv1017174	chr6:2213893-2340529	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv1033201	chr6:2218647-2308518	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
12	nsv538101	chr6:2218647-2308518	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	esv2763526	chr6:2230064-2311916	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
14	nsv1021573	chr6:2246721-2832408	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
15	nsv538102	chr6:2246721-2832408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
16	nsv883390	chr6:2265344-2584919	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
17	nsv883391	chr6:2282747-2507448	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2247800-2284200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:2255800-2288600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:2264400-2285800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:2264600-2286400	Weak transcription	HSMM	muscle
5	chr6:2271400-2287600	Weak transcription	Right Ventricle	heart
6	chr6:2273000-2288200	Weak transcription	Aorta	Aorta
7	chr6:2273600-2284400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:2273600-2286000	Weak transcription	Fetal Thymus	thymus
9	chr6:2273600-2286600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:2273600-2286600	Weak transcription	Pancreas	Pancrea
11	chr6:2273600-2286800	Weak transcription	Colonic Mucosa	Colon
12	chr6:2273600-2288200	Weak transcription	Spleen	Spleen
13	chr6:2273800-2284000	Weak transcription	Thymus	Thymus
14	chr6:2273800-2288800	Weak transcription	Brain Anterior Caudate	brain
15	chr6:2274200-2286200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:2274400-2284800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:2274600-2284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:2274600-2290000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:2275400-2319400	Weak transcription	Gastric	stomach
20	chr6:2275800-2288200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:2276400-2284800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:2276400-2286600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:2276400-2287800	Weak transcription	Stomach Mucosa	stomach
24	chr6:2276800-2285400	Weak transcription	NHDF-Ad	bronchial
25	chr6:2278200-2287000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:2281200-2289200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:2282200-2284000	Weak transcription	Placenta	Placenta
28	chr6:2282600-2287400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:2282800-2284200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr6:2283200-2285200	ZNF genes & repeats	Fetal Intestine Large	intestine
31	chr6:2283400-2284200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:2283400-2285000	Strong transcription	Fetal Lung	lung
33	chr6:2283400-2286600	Weak transcription	Fetal Stomach	stomach
34	chr6:2283600-2284000	Strong transcription	Adipose Nuclei	Adipose
35	chr6:2283600-2284400	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:2283600-2284600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr6:2283600-2284800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr6:2283600-2285000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
39	chr6:2283600-2285200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:2283600-2286600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:2283600-2287800	Weak transcription	Brain Angular Gyrus	brain
42	chr6:2283800-2284000	ZNF genes & repeats	Primary T cells from cord blood	blood
43	chr6:2283800-2284000	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr6:2283800-2284200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:2283800-2284200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:2283800-2284200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr6:2283800-2284200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
48	chr6:2283800-2284200	ZNF genes & repeats	Ovary	ovary
49	chr6:2283800-2284200	ZNF genes & repeats	HepG2	liver
50	chr6:2283800-2284200	ZNF genes & repeats	HSMMtube	muscle

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