Variant report

Variant	rs532098006
Chromosome Location	chr20:25732461-25732462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2758517	chr20:25701992-26319569	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	esv2758790	chr20:25701992-26319569	Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1062442	chr20:25714010-25754838	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv470545	chr20:25715507-26309255	Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
8	esv18917	chr20:25731048-25780918	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv820681	chr20:25731048-25780918	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25731200-25732600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr20:25731200-25732600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:25731200-25732600	Active TSS	Fetal Intestine Large	intestine
4	chr20:25731200-25732800	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr20:25731200-25732800	Enhancers	Spleen	Spleen
6	chr20:25731400-25732600	Active TSS	H1 Cell Line	embryonic stem cell
7	chr20:25731400-25732600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:25731400-25732600	Active TSS	Fetal Brain Male	brain
9	chr20:25731400-25732600	Active TSS	Fetal Kidney	kidney
10	chr20:25731600-25732600	Active TSS	A549	lung
11	chr20:25731600-25732600	Active TSS	NHEK	skin
12	chr20:25732000-25732600	Flanking Bivalent TSS/Enh	HepG2	liver
13	chr20:25732000-25732800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr20:25732200-25732600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr20:25732200-25732600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr20:25732200-25732600	Flanking Active TSS	Fetal Lung	lung
17	chr20:25732200-25732600	Enhancers	Gastric	stomach
18	chr20:25732200-25732600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr20:25732200-25732800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr20:25732200-25732800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr20:25732200-25732800	Enhancers	Esophagus	oesophagus
22	chr20:25732200-25732800	Enhancers	Lung	lung
23	chr20:25732200-25736400	Weak transcription	Brain Angular Gyrus	brain
24	chr20:25732200-25737800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr20:25732400-25732600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr20:25732400-25732600	Enhancers	Primary T cells from cord blood	blood
27	chr20:25732400-25732600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr20:25732400-25732600	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr20:25732400-25732600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr20:25732400-25732600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr20:25732400-25732600	Enhancers	Liver	Liver
32	chr20:25732400-25732600	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr20:25732400-25732600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr20:25732400-25732600	Enhancers	Thymus	Thymus
35	chr20:25732400-25732600	Enhancers	HMEC	breast
36	chr20:25732400-25732800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr20:25732400-25732800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr20:25732400-25732800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr20:25732400-25732800	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr20:25732400-25732800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr20:25732400-25732800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr20:25732400-25732800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr20:25732400-25732800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr20:25732400-25732800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr20:25732400-25732800	Enhancers	Fetal Brain Female	brain
46	chr20:25732400-25732800	Enhancers	Pancreas	Pancrea
47	chr20:25732400-25732800	Enhancers	Right Ventricle	heart
48	chr20:25732400-25733000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr20:25732400-25737800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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