Variant report

Variant	rs532464623
Chromosome Location	chr15:58732760-58732761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58623562..58626994-chr15:58730618..58733502,3	MCF-7	breast:
2	chr15:58731963..58734945-chr15:58743116..58746394,3	K562	blood:
3	chr15:58729567..58734283-chr15:58741092..58746394,5	K562	blood:
4	chr15:58726654..58728474-chr15:58730449..58733344,2	MCF-7	breast:
5	chr15:58732540..58734705-chr15:58743392..58745682,2	MCF-7	breast:
6	chr15:58731261..58732919-chr15:58735065..58738026,2	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1043362	chr15:58726337-58756571	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv1794723	chr15:58732468-58739413	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58726400-58737200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:58726600-58734200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:58728800-58738200	Enhancers	Fetal Thymus	thymus
4	chr15:58729200-58733400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:58729800-58737800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:58730000-58734800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:58730000-58737800	Enhancers	HepG2	liver
8	chr15:58730200-58734400	Enhancers	Pancreas	Pancrea
9	chr15:58730400-58737800	Enhancers	Right Atrium	heart
10	chr15:58730400-58738000	Enhancers	Liver	Liver
11	chr15:58730400-58746200	Weak transcription	GM12878-XiMat	blood
12	chr15:58730600-58734600	Enhancers	Right Ventricle	heart
13	chr15:58730800-58735200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:58730800-58737800	Enhancers	Left Ventricle	heart
15	chr15:58731000-58732800	Enhancers	Duodenum Mucosa	Duodenum
16	chr15:58731000-58734400	Enhancers	Fetal Muscle Leg	muscle
17	chr15:58731000-58734400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr15:58731000-58735200	Enhancers	Fetal Intestine Large	intestine
19	chr15:58731000-58735600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:58731000-58735800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:58731200-58733000	Weak transcription	Spleen	Spleen
22	chr15:58731200-58734600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr15:58731200-58734600	Enhancers	Placenta	Placenta
24	chr15:58731200-58734800	Enhancers	K562	blood
25	chr15:58731200-58735200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:58731200-58736800	Weak transcription	Gastric	stomach
27	chr15:58731200-58736800	Enhancers	NHDF-Ad	bronchial
28	chr15:58731200-58737200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:58731200-58737600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:58731200-58737800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:58731400-58736600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:58731400-58737000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:58731600-58734600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:58731600-58735000	Enhancers	Adipose Nuclei	Adipose
35	chr15:58731600-58735000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:58731600-58735800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:58731600-58737200	Enhancers	Stomach Mucosa	stomach
38	chr15:58731800-58732800	Weak transcription	Esophagus	oesophagus
39	chr15:58731800-58734200	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr15:58731800-58735000	Enhancers	Small Intestine	intestine
41	chr15:58731800-58736800	Enhancers	NHLF	lung
42	chr15:58731800-58739400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:58732000-58732800	Enhancers	Ovary	ovary
44	chr15:58732000-58733200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:58732000-58733200	Enhancers	Fetal Kidney	kidney
46	chr15:58732000-58733400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:58732000-58733800	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr15:58732000-58733800	Flanking Active TSS	A549	lung
49	chr15:58732000-58734200	Enhancers	NHEK	skin
50	chr15:58732000-58734400	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links