Variant report

Variant	rs535996110
Chromosome Location	chr9:21195644-21195645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr9:21195327-21195832	GM12891	blood:	n/a	chr9:21195664-21195671 chr9:21195658-21195665
2	PAX5	chr9:21195459-21195804	GM12878	blood:	n/a	chr9:21195583-21195592 chr9:21195658-21195667
3	CTCF	chr9:21195051-21195657	A549	lung:	n/a	chr9:21195318-21195336
4	PAX5	chr9:21195472-21195721	GM12878	blood:	n/a	chr9:21195583-21195592 chr9:21195658-21195667
5	TCF12	chr9:21195463-21195688	GM12878	blood:	n/a	n/a
6	SPI1	chr9:21195206-21195816	GM12891	blood:	n/a	chr9:21195664-21195671 chr9:21195658-21195665
7	EBF1	chr9:21195456-21195674	GM12878	blood:	n/a	n/a
8	CTCF	chr9:21195159-21195661	Spleen_OC	spleen:	n/a	chr9:21195318-21195336
9	IRF4	chr9:21195392-21195855	GM12878	blood:	n/a	n/a
10	CTCF	chr9:21195574-21195676	Lung_OC	lung:	n/a	n/a
11	CTCF	chr9:21195585-21195687	GM10266	blood:	n/a	n/a
12	SPI1	chr9:21195287-21195881	GM12878	blood:	n/a	chr9:21195664-21195671 chr9:21195658-21195665
13	POU2F2	chr9:21195455-21195773	GM12878	blood:	n/a	n/a
14	BATF	chr9:21195481-21195714	GM12878	blood:	n/a	n/a
15	IRF4	chr9:21195456-21195836	GM12878	blood:	n/a	n/a
16	SPI1	chr9:21195409-21195767	GM12878	blood:	n/a	chr9:21195664-21195671 chr9:21195658-21195665
17	BCL11A	chr9:21195389-21195749	GM12878	blood:	n/a	chr9:21195583-21195592
18	BCL11A	chr9:21195471-21195683	GM12878	blood:	n/a	chr9:21195583-21195592
19	RXRA	chr9:21195455-21195726	GM12878	blood:	n/a	chr9:21195583-21195592 chr9:21195661-21195670
20	BATF	chr9:21195452-21195727	GM12878	blood:	n/a	n/a
21	CTCF	chr9:21195576-21195686	LNCaP	prostate:	n/a	n/a

Variant related genes	Relation type
IFNWP9	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv466293	chr9:21029330-21199680	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv613752	chr9:21029330-21199680	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv892735	chr9:21157373-21242161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv968599	chr9:21166047-21239960	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv613755	chr9:21170364-21216028	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1016978	chr9:21171267-21214877	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1022579	chr9:21178517-21228248	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv2757324	chr9:21181454-21196515	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2759678	chr9:21181454-21196515	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1018561	chr9:21181454-21228248	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	esv1795305	chr9:21183675-21205399	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1033177	chr9:21184475-21206426	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv3439842	chr9:21186801-21227493	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv613756	chr9:21187700-21227391	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv438096	chr9:21190827-21199680	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv516132	chr9:21191463-21206427	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
22	nsv1021574	chr9:21191684-21228248	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
23	esv3342983	chr9:21192585-21211466	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
24	esv3393912	chr9:21192898-21211563	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
25	esv3450892	chr9:21194168-21212485	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
26	nsv8425	chr9:21195026-21206846	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
27	esv6326	chr9:21195284-21214004	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21195200-21195800	Active TSS	Hela-S3	cervix
2	chr9:21195200-21196000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:21195200-21196000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:21195400-21195800	Enhancers	Primary hematopoietic stem cells	blood
5	chr9:21195600-21195800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:21195600-21196200	Enhancers	GM12878-XiMat	blood
7	chr9:21195600-21196400	Enhancers	Primary monocytes fromperipheralblood	blood

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