Variant report

Variant	rs537450924
Chromosome Location	chr15:77925364-77925365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr15:77925341-77926055	K562	blood:	n/a	chr15:77925888-77925903 chr15:77925417-77925432
2	POLR2A	chr15:77925129-77926145	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr15:77925014-77926048	K562	blood:	n/a	n/a
4	POLR2A	chr15:77925358-77926122	H1-hESC	embryonic stem cell:	n/a	n/a
5	EGR1	chr15:77925121-77925543	K562	blood:	n/a	chr15:77925393-77925408 chr15:77925394-77925407 chr15:77925316-77925329 chr15:77925396-77925406 chr15:77925121-77925131
6	ZBTB7A	chr15:77925228-77926263	ECC-1	luminal epithelium:	n/a	n/a
7	MAX	chr15:77925029-77926147	K562	blood:	n/a	chr15:77925671-77925678
8	ZNF263	chr15:77923899-77927072	HEK293-T-REx	kidney:	n/a	chr15:77924758-77924767 chr15:77926052-77926061 chr15:77925322-77925331 chr15:77926338-77926347
9	POLR2A	chr15:77925160-77926258	SK-N-MC	brain:	n/a	n/a
10	TAF1	chr15:77925032-77925386	H1-hESC	embryonic stem cell:	n/a	n/a
11	ZNF263	chr15:77924464-77926639	K562	blood:	n/a	chr15:77924758-77924767 chr15:77926052-77926061 chr15:77925322-77925331 chr15:77926338-77926347
12	ZNF143	chr15:77925132-77925372	K562	blood:	n/a	chr15:77925310-77925328
13	MXI1	chr15:77925361-77926571	IMR90	lung:	n/a	n/a
14	E2F6	chr15:77925342-77926317	H1-hESC	embryonic stem cell:	n/a	n/a
15	EGR1	chr15:77925180-77925447	K562	blood:	n/a	chr15:77925393-77925408 chr15:77925394-77925407 chr15:77925316-77925329 chr15:77925396-77925406
16	E2F6	chr15:77924623-77926157	K562	blood:	n/a	chr15:77924787-77924801
17	MYC	chr15:77925148-77926186	K562	blood:	n/a	chr15:77925671-77925678
18	MAZ	chr15:77925053-77926446	IMR90	lung:	n/a	chr15:77925671-77925678 chr15:77926409-77926419
19	MYC	chr15:77925217-77925368	K562	blood:	n/a	n/a
20	CTCF	chr15:77925217-77927134	HCT-116	colon:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77926951-77926960 chr15:77926948-77926966 chr15:77926950-77926971 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926951-77926964 chr15:77926007-77926028 chr15:77926344-77926353
21	ZNF143	chr15:77925145-77927535	H1-hESC	embryonic stem cell:	n/a	chr15:77925310-77925328 chr15:77927084-77927103 chr15:77927155-77927173 chr15:77926483-77926501
22	ZBTB7A	chr15:77925234-77926238	ECC-1	luminal epithelium:	n/a	n/a
23	MAX	chr15:77925072-77926605	H1-hESC	embryonic stem cell:	n/a	chr15:77925671-77925678 chr15:77926530-77926539 chr15:77926409-77926419
24	MAX	chr15:77925154-77926167	K562	blood:	n/a	chr15:77925671-77925678
25	TAF1	chr15:77925124-77925458	K562	blood:	n/a	n/a
26	MYC	chr15:77925163-77926193	K562	blood:	n/a	chr15:77925671-77925678
27	POLR2A	chr15:77925021-77926173	H1-neurons	neurons:	n/a	n/a
28	ZBTB7A	chr15:77924134-77925615	K562	blood:	n/a	chr15:77924145-77924152 chr15:77924395-77924403
29	TAF1	chr15:77925119-77925481	H1-neurons	neurons:	n/a	n/a
30	CCNT2	chr15:77925101-77926149	K562	blood:	n/a	chr15:77925365-77925374
31	CTCF	chr15:77924998-77927629	SK-N-SH	brain:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77926951-77926960 chr15:77926948-77926966 chr15:77926950-77926971 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926951-77926964 chr15:77926007-77926028 chr15:77926344-77926353
32	RAD21	chr15:77925015-77926561	SK-N-SH	brain:	n/a	chr15:77926011-77926021 chr15:77925950-77925963 chr15:77926006-77926025 chr15:77925952-77925964 chr15:77926007-77926021 chr15:77925947-77925966 chr15:77925870-77925880 chr15:77926009-77926022 chr15:77925994-77926008 chr15:77926011-77926023
33	RCOR1	chr15:77925182-77926212	K562	blood:	n/a	n/a
34	POLR2A	chr15:77925097-77927030	H1-hESC	embryonic stem cell:	n/a	n/a
35	MAX	chr15:77925289-77926255	ECC-1	luminal epithelium:	n/a	chr15:77925671-77925678
36	CTCF	chr15:77925280-77925430	GM12870	blood:	n/a	n/a
37	HMGN3	chr15:77925163-77926162	K562	blood:	n/a	n/a
38	POLR2A	chr15:77925291-77926304	PFSK-1	brain:	n/a	n/a
39	TBP	chr15:77925194-77926186	K562	blood:	n/a	n/a
40	CTCF	chr15:77925120-77927959	A549	lung:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77926951-77926960 chr15:77926948-77926966 chr15:77926950-77926971 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926951-77926964 chr15:77926007-77926028 chr15:77926344-77926353
41	TAF1	chr15:77925088-77925455	PFSK-1	brain:	n/a	n/a
42	UBTF	chr15:77924102-77926195	K562	blood:	n/a	n/a
43	MAZ	chr15:77925087-77926270	K562	blood:	n/a	chr15:77925671-77925678
44	JUN	chr15:77925124-77926460	K562	blood:	n/a	chr15:77925344-77925358
45	POLR2A	chr15:77923029-77926247	H1-neurons	neurons:	n/a	n/a
46	REST	chr15:77922878-77926930	H1-neurons	neurons:	n/a	chr15:77924598-77924618 chr15:77925405-77925418 chr15:77926562-77926570 chr15:77923211-77923231 chr15:77924598-77924618 chr15:77925784-77925793 chr15:77923269-77923282 chr15:77924408-77924418 chr15:77924761-77924774 chr15:77924598-77924618 chr15:77926406-77926419 chr15:77924348-77924361 chr15:77923214-77923227 chr15:77925893-77925906
47	YY1	chr15:77925068-77925440	K562	blood:	n/a	chr15:77925418-77925429 chr15:77925327-77925341
48	MAX	chr15:77925183-77926307	A549	lung:	n/a	chr15:77925671-77925678
49	TAF1	chr15:77925056-77925373	K562	blood:	n/a	n/a
50	MAX	chr15:77925008-77926473	A549	lung:	n/a	chr15:77925671-77925678 chr15:77926409-77926419

No.	Distal block	Cell Line	Cell type
1	chr15:77925249..77927257-chr15:78113205..78115049,24	MCF-7	breast:
2	chr15:77925299..77927652-chr15:78112444..78114100,3	MCF-7	breast:
3	chr15:77923251..77928296-chr15:78111448..78115771,8	MCF-7	breast:
4	chr15:77924601..77927275-chr15:77937272..77938910,2	K562	blood:
5	chr15:77925072..77927787-chr15:78111223..78115888,59	MCF-7	breast:
6	chr15:77924941..77926828-chr15:77932359..77934227,2	MCF-7	breast:
7	chr15:77922761..77925687-chr15:77933695..77936379,3	K562	blood:

Variant related genes	Relation type
LINGO1	TF binding region
ENSG00000259666	Chromatin interaction
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv20199	chr15:77923484-77925974	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3327337	chr15:77923947-77926345	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3355911	chr15:77924122-77926670	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3403357	chr15:77924447-77926045	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77923000-77927400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr15:77923200-77925600	Active TSS	Ovary	ovary
3	chr15:77923400-77926000	Active TSS	Brain Anterior Caudate	brain
4	chr15:77923400-77926000	Active TSS	Brain Substantia Nigra	brain
5	chr15:77923400-77927600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr15:77923600-77926000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:77923600-77926400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:77923600-77926600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr15:77923800-77925600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:77924000-77927600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:77924400-77925400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:77924400-77925400	Active TSS	Spleen	Spleen
13	chr15:77924400-77925600	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr15:77924400-77925600	Active TSS	Left Ventricle	heart
15	chr15:77924400-77925600	Bivalent/Poised TSS	HepG2	liver
16	chr15:77924400-77926000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:77924400-77926000	Active TSS	Brain Cingulate Gyrus	brain
18	chr15:77924400-77926000	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr15:77924400-77926200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:77924400-77926200	Active TSS	Brain Angular Gyrus	brain
21	chr15:77924400-77926600	Active TSS	H1 Cell Line	embryonic stem cell
22	chr15:77924400-77926600	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:77924600-77925400	Active TSS	Primary hematopoietic stem cells	blood
24	chr15:77924600-77925400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr15:77924600-77925400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:77924600-77925400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
27	chr15:77924600-77925400	Weak transcription	Fetal Lung	lung
28	chr15:77924600-77925400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
29	chr15:77924600-77925600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:77924600-77925600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:77924600-77925600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:77924600-77925600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:77924600-77925600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:77924600-77925600	Bivalent/Poised TSS	Fetal Stomach	stomach
35	chr15:77924600-77925600	Active TSS	Pancreas	Pancrea
36	chr15:77924600-77926000	Active TSS	Aorta	Aorta
37	chr15:77924600-77926000	Active TSS	Psoas Muscle	Psoas
38	chr15:77924600-77926000	Bivalent/Poised TSS	Thymus	Thymus
39	chr15:77924600-77926000	Active TSS	A549	lung
40	chr15:77924600-77926000	Bivalent/Poised TSS	HSMM	muscle
41	chr15:77924600-77926000	Active TSS	K562	blood
42	chr15:77924600-77926600	Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr15:77924600-77927000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr15:77924600-77927400	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr15:77924600-77927600	Enhancers	Fetal Heart	heart
46	chr15:77924800-77925400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
47	chr15:77924800-77925400	Bivalent/Poised TSS	Primary hematopoietic stem cells short term culture	blood
48	chr15:77924800-77925400	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr15:77924800-77925400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:77924800-77925400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links