Variant report

Variant	esv3355911
Chromosome Location	chr15:77924122-77926670
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:77925899-77926076	K562	blood:	n/a	n/a
2	ATF2	chr15:77925461-77927008	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF2	chr15:77925762-77927046	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF3	chr15:77925816-77926085	K562	blood:	n/a	n/a
5	ATF3	chr15:77925732-77926191	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF3	chr15:77925857-77926179	GM12878	blood:	n/a	n/a
7	ATF3	chr15:77925817-77926099	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr15:77925754-77926241	A549	lung:	n/a	n/a
9	BACH1	chr15:77925619-77926520	H1-hESC	embryonic stem cell:	n/a	n/a
10	BCL3	chr15:77925412-77926262	A549	lung:	n/a	chr15:77925420-77925433
11	BCLAF1	chr15:77925737-77926107	GM12878	blood:	n/a	n/a
12	BCLAF1	chr15:77925756-77926123	GM12878	blood:	n/a	n/a
13	BHLHE40	chr15:77925559-77926179	K562	blood:	n/a	n/a
14	BHLHE40	chr15:77925834-77926167	GM12878	blood:	n/a	n/a
15	BRCA1	chr15:77925788-77926457	H1-hESC	embryonic stem cell:	n/a	n/a
16	BRCA1	chr15:77925889-77926125	Hela-S3	cervix:	n/a	n/a
17	BRCA1	chr15:77925929-77926145	GM12878	blood:	n/a	n/a
18	CBX3	chr15:77925518-77926182	K562	blood:	n/a	n/a
19	CCNT2	chr15:77925101-77926149	K562	blood:	n/a	chr15:77925365-77925374
20	CEBPB	chr15:77925636-77926763	H1-hESC	embryonic stem cell:	n/a	n/a
21	CEBPB	chr15:77925907-77926023	HepG2	liver:	n/a	n/a
22	CEBPB	chr15:77925521-77925770	K562	blood:	n/a	n/a
23	CEBPD	chr15:77925799-77926065	HepG2	liver:	n/a	n/a
24	CHD1	chr15:77925586-77925785	H1-hESC	embryonic stem cell:	n/a	n/a
25	CHD1	chr15:77925168-77925336	H1-hESC	embryonic stem cell:	n/a	chr15:77925320-77925330
26	CHD1	chr15:77925898-77926113	GM12878	blood:	n/a	n/a
27	CHD1	chr15:77925504-77926326	IMR90	lung:	n/a	n/a
28	CHD2	chr15:77925751-77926140	K562	blood:	n/a	n/a
29	CHD2	chr15:77925813-77926142	Hela-S3	cervix:	n/a	n/a
30	CHD2	chr15:77925985-77925990	HepG2	liver:	n/a	n/a
31	CHD2	chr15:77925542-77927058	H1-hESC	embryonic stem cell:	n/a	n/a
32	CHD2	chr15:77925795-77926200	GM12878	blood:	n/a	n/a
33	CREB1	chr15:77925638-77926184	A549	lung:	n/a	n/a
34	CREB1	chr15:77925792-77926741	H1-hESC	embryonic stem cell:	n/a	n/a
35	CREB1	chr15:77925694-77927515	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTBP2	chr15:77925487-77927481	H1-hESC	embryonic stem cell:	n/a	n/a
37	CTCF	chr15:77925900-77926050	GM12801	blood:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028
38	CTCF	chr15:77925619-77925720	MCF-7	breast:	n/a	n/a
39	CTCF	chr15:77925798-77926154	SK-N-SH_RA	brain:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028
40	CTCF	chr15:77925600-77925750	HEEpiC	esophagus:	n/a	n/a
41	CTCF	chr15:77925723-77926218	T-47D	breast:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028
42	CTCF	chr15:77926607-77926662	Fibrobl	skin:	n/a	n/a
43	CTCF	chr15:77925217-77927134	HCT-116	colon:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77926951-77926960 chr15:77926948-77926966 chr15:77926950-77926971 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926951-77926964 chr15:77926007-77926028 chr15:77926344-77926353
44	CTCF	chr15:77925880-77926030	GM12864	blood:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028
45	CTCF	chr15:77925920-77926070	AoAF	blood vessel:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028
46	CTCF	chr15:77926480-77926630	BJ	skin:	n/a	n/a
47	CTCF	chr15:77925960-77926110	AG04450	lung:	n/a	chr15:77926005-77926023 chr15:77926008-77926021 chr15:77926007-77926028
48	CTCF	chr15:77926552-77926700	GM10266	blood:	n/a	n/a
49	CTCF	chr15:77925940-77926090	HCM	heart:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028
50	CTCF	chr15:77925920-77926070	HPAF	blood vessel:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:77924281-77924331	HepG2	liver:	n/a
2	chr15:77925892-77925942	BE2_C	brain:	n/a
3	chr15:77925960-77926010	HCPEpiC	choroid plexus:	n/a
4	chr15:77925481-77925531	HRPEpiC	eye:	n/a
5	chr15:77924281-77924331	NHDF-neo	bronchial:	n/a
6	chr15:77924281-77924331	Caco-2	colon:	n/a
7	chr15:77925960-77926010	U87	brain:	n/a
8	chr15:77924281-77924331	SK-N-SH_RA	brain:	n/a
9	chr15:77925960-77926010	CMK	blood:	n/a
10	chr15:77925892-77925942	HL-60	blood:	n/a
11	chr15:77924281-77924331	Jurkat	blood:	n/a
12	chr15:77925481-77925531	HL-60	blood:	n/a
13	chr15:77924697-77924747	A549	lung:	n/a
14	chr15:77925960-77926010	AG04449	skin:	fetal
15	chr15:77924281-77924331	AG10803	skin:	n/a
16	chr15:77925960-77926010	AG09309	skin:	n/a
17	chr15:77925892-77925942	HepG2	liver:	n/a
18	chr15:77925892-77925942	HEK293	kidney:	embryo
19	chr15:77924569-77924619	LNCaP	prostate:	n/a
20	chr15:77924281-77924331	AoSMC	blood vessel:	n/a
21	chr15:77924569-77924619	BJ	skin:	n/a
22	chr15:77924281-77924331	HL-60	blood:	n/a
23	chr15:77925892-77925942	HEEpiC	esophagus:	n/a
24	chr15:77924569-77924619	AG04450	lung:	fetal
25	chr15:77925481-77925531	Jurkat	blood:	n/a
26	chr15:77924281-77924331	H1-hESC	embryonic stem cell:	embryo
27	chr15:77924697-77924747	CMK	blood:	n/a
28	chr15:77924569-77924619	NHBE	bronchial:	n/a
29	chr15:77925892-77925942	PANC-1	pancreas:	n/a
30	chr15:77924569-77924619	HEK293	kidney:	embryo
31	chr15:77925481-77925531	GM12878	blood:	n/a
32	chr15:77924697-77924747	SK-N-SH_RA	brain:	n/a
33	chr15:77924281-77924331	ovcar-3	ovarian:	n/a
34	chr15:77924569-77924619	PFSK-1	brain:	n/a
35	chr15:77924569-77924619	AoSMC	blood vessel:	n/a
36	chr15:77924569-77924619	AG04449	skin:	fetal
37	chr15:77924697-77924747	NHDF-neo	bronchial:	n/a
38	chr15:77924281-77924331	ProgFib	skin:	n/a
39	chr15:77924697-77924747	ovcar-3	ovarian:	n/a
40	chr15:77925892-77925942	K562	blood:	n/a
41	chr15:77924281-77924331	HCPEpiC	choroid plexus:	n/a
42	chr15:77925892-77925942	HRE	kidney:	n/a
43	chr15:77925960-77926010	HPAEpiC	pulmonary alveolar:	n/a
44	chr15:77924569-77924619	SK-N-SH	brain:	n/a
45	chr15:77924697-77924747	AG04449	skin:	fetal
46	chr15:77925481-77925531	HRCEpiC	kidney:	n/a
47	chr15:77925481-77925531	Hela-S3	cervix:	n/a
48	chr15:77925892-77925942	A549	lung:	n/a
49	chr15:77924697-77924747	NT2-D1	testis:	n/a
50	chr15:77924697-77924747	HEK293	kidney:	embryo

No.	Distal block	Cell Line	Cell type
1	chr15:77478581..77479511-chr15:77925565..77926440,3	MCF-7	breast:
2	chr15:77925435..77927439-chr15:78112259..78115090,22	K562	blood:
3	chr15:77925603..77926173-chr15:77946987..77947667,2	MCF-7	breast:
4	chr15:77922761..77925687-chr15:77933695..77936379,3	K562	blood:
5	chr15:77923251..77928296-chr15:78111448..78115771,8	MCF-7	breast:
6	chr15:77924941..77926828-chr15:77932359..77934227,2	MCF-7	breast:
7	chr15:77838960..77839788-chr15:77925715..77926415,4	MCF-7	breast:
8	chr15:77925387..77926440-chr15:77951721..77952677,7	MCF-7	breast:
9	chr15:77925519..77926294-chr15:78162494..78163468,3	MCF-7	breast:
10	chr15:77478486..77479274-chr15:77925458..77926114,2	MCF-7	breast:
11	chr15:77925397..77928069-chr15:78112259..78116246,3	K562	blood:
12	chr15:77909277..77910127-chr15:77925790..77926339,2	MCF-7	breast:
13	chr11:60252998..60253911-chr15:77925589..77926334,2	MCF-7	breast:
14	chr15:77925536..77926440-chr15:77946558..77947953,8	MCF-7	breast:
15	chr15:77925566..77926501-chr15:77951718..77952824,3	K562	blood:
16	chr15:77909817..77910574-chr15:77925500..77926398,3	MCF-7	breast:
17	chr15:77925492..77926460-chr15:77947054..77947731,3	K562	blood:
18	chr15:77835764..77836461-chr15:77925509..77926265,4	MCF-7	breast:
19	chr15:77861324..77862294-chr15:77925777..77926357,2	K562	blood:
20	chr15:77925072..77927787-chr15:78111223..78115888,59	MCF-7	breast:
21	chr15:77914562..77916092-chr15:77921484..77924358,2	MCF-7	breast:
22	chr15:77925580..77926309-chr15:78156358..78157211,2	MCF-7	breast:
23	chr15:77925299..77927652-chr15:78112444..78114100,3	MCF-7	breast:
24	chr15:77925576..77926405-chr15:78167119..78167924,3	K562	blood:
25	chr15:77399950..77400942-chr15:77923445..77924282,3	MCF-7	breast:
26	chr15:77925397..77927315-chr15:78112259..78115116,2	K562	blood:
27	chr15:77925509..77926398-chr15:78076937..78077835,4	K562	blood:
28	chr15:77925887..77926426-chr19:40734602..40735348,2	MCF-7	breast:
29	chr15:77912184..77913186-chr15:77925455..77926450,5	K562	blood:
30	chr15:77925532..77926425-chr15:78076783..78078398,4	MCF-7	breast:
31	chr15:77925750..77926474-chr15:78007678..78008229,2	MCF-7	breast:
32	chr15:77924601..77927275-chr15:77937272..77938910,2	K562	blood:
33	chr15:77925249..77927257-chr15:78113205..78115049,24	MCF-7	breast:
34	chr15:77835401..77836400-chr15:77925681..77926470,4	K562	blood:
35	chr15:77912527..77913180-chr15:77925436..77926049,2	MCF-7	breast:
36	chr15:77316379..77317255-chr15:77925626..77926458,2	MCF-7	breast:

Variant related genes	Relation type
LINGO1	TF binding region
LINGO1	CpG island
ENSG00000169783	chromatin interactions
ENSG00000259281	chromatin interactions
ENSG00000259666	chromatin interactions

Extended variants
information (count: 86 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533257460	chr15:77924138-77924139	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs551662946	chr15:77924141-77924142	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs527389538	chr15:77924152-77924153	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs533529401	chr15:77924167-77924168	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs548993924	chr15:77924172-77924173	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs567225687	chr15:77924177-77924178	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs537990803	chr15:77924217-77924218	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs557261746	chr15:77924218-77924219	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs575392396	chr15:77924229-77924230	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs148347611	chr15:77924260-77924261	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs527829985	chr15:77924399-77924400	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs558001179	chr15:77924409-77924410	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs112948516	chr15:77924448-77924449	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs540249463	chr15:77924542-77924543	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs562141429	chr15:77924607-77924608	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs574047775	chr15:77924643-77924644	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs112209041	chr15:77924653-77924654	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs550718792	chr15:77924746-77924747	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs112499127	chr15:77924755-77924756	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs544734075	chr15:77924823-77924824	Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs534146993	chr15:77924991-77924992	Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs562981992	chr15:77924994-77924995	Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs180773286	chr15:77925088-77925089	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs112465582	chr15:77925092-77925093	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs142291768	chr15:77925237-77925238	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs560461084	chr15:77925286-77925287	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs146390292	chr15:77925299-77925300	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs111943736	chr15:77925302-77925303	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs567292794	chr15:77925363-77925364	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs537450924	chr15:77925364-77925365	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs549417974	chr15:77925368-77925369	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs571031151	chr15:77925371-77925372	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs539609415	chr15:77925372-77925373	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs557964372	chr15:77925402-77925403	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs573437034	chr15:77925451-77925452	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs549664233	chr15:77925460-77925461	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs569593923	chr15:77925466-77925467	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs368188344	chr15:77925474-77925475	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs62009130	chr15:77925507-77925508	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs573939753	chr15:77925511-77925512	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs544285497	chr15:77925512-77925513	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs552689178	chr15:77925546-77925547	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs139101213	chr15:77925577-77925578	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs545198373	chr15:77925604-77925605	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs200980065	chr15:77925622-77925623	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs144352513	chr15:77925623-77925624	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs113777953	chr15:77925641-77925642	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs560433482	chr15:77925701-77925702	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs142299867	chr15:77925705-77925706	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs542864912	chr15:77925848-77925849	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:471 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77921800-77924200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:77921800-77924400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
3	chr15:77922600-77924800	Bivalent/Poised TSS	Fetal Brain Female	brain
4	chr15:77923000-77924400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
5	chr15:77923000-77924400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr15:77923000-77924600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:77923000-77924600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:77923000-77924600	Bivalent Enhancer	Fetal Heart	heart
9	chr15:77923000-77927400	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr15:77923200-77924600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:77923200-77924600	Bivalent/Poised TSS	Fetal Kidney	kidney
12	chr15:77923200-77924600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
13	chr15:77923200-77924600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr15:77923200-77925600	Active TSS	Ovary	ovary
15	chr15:77923400-77924200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
16	chr15:77923400-77924200	Enhancers	Pancreas	Pancrea
17	chr15:77923400-77924400	Bivalent Enhancer	Fetal Brain Male	brain
18	chr15:77923400-77924600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
19	chr15:77923400-77924800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:77923400-77924800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
21	chr15:77923400-77926000	Active TSS	Brain Anterior Caudate	brain
22	chr15:77923400-77926000	Active TSS	Brain Substantia Nigra	brain
23	chr15:77923400-77927600	Active TSS	H9 Cell Line	embryonic stem cell
24	chr15:77923600-77924600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:77923600-77924600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
26	chr15:77923600-77924600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
27	chr15:77923600-77924600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
28	chr15:77923600-77926000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:77923600-77926400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:77923600-77926600	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr15:77923800-77924200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr15:77923800-77924200	Bivalent Enhancer	Stomach Mucosa	stomach
33	chr15:77923800-77924400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:77923800-77924600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:77923800-77924600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:77923800-77924600	Flanking Active TSS	K562	blood
37	chr15:77923800-77925200	Active TSS	Right Ventricle	heart
38	chr15:77923800-77925600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr15:77924000-77924200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
40	chr15:77924000-77924200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:77924000-77924200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:77924000-77924200	Flanking Active TSS	Fetal Lung	lung
43	chr15:77924000-77924200	Bivalent/Poised TSS	Left Ventricle	heart
44	chr15:77924000-77924200	Flanking Bivalent TSS/Enh	Spleen	Spleen
45	chr15:77924000-77924400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
46	chr15:77924000-77924400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:77924000-77924400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:77924000-77924400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
49	chr15:77924000-77924400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
50	chr15:77924000-77924400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain

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