Variant report

Variant	rs544285497
Chromosome Location	chr15:77925512-77925513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:77925511-77926168	Hela-S3	cervix:	n/a	chr15:77925671-77925678
2	HEY1	chr15:77925341-77926055	K562	blood:	n/a	chr15:77925888-77925903 chr15:77925417-77925432
3	POLR2A	chr15:77925129-77926145	PFSK-1	brain:	n/a	n/a
4	POLR2A	chr15:77925014-77926048	K562	blood:	n/a	n/a
5	POLR2A	chr15:77925358-77926122	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAX	chr15:77925474-77926231	HepG2	liver:	n/a	chr15:77925671-77925678
7	EGR1	chr15:77925121-77925543	K562	blood:	n/a	chr15:77925393-77925408 chr15:77925394-77925407 chr15:77925316-77925329 chr15:77925396-77925406 chr15:77925121-77925131
8	MAX	chr15:77925474-77926117	SK-N-SH	brain:	n/a	chr15:77925671-77925678
9	ZBTB7A	chr15:77925228-77926263	ECC-1	luminal epithelium:	n/a	n/a
10	MAX	chr15:77925029-77926147	K562	blood:	n/a	chr15:77925671-77925678
11	SMC3	chr15:77925473-77927244	SK-N-SH	brain:	n/a	chr15:77925870-77925880 chr15:77925948-77925962 chr15:77925912-77925922 chr15:77926954-77926964 chr15:77926950-77926958 chr15:77926950-77926964 chr15:77926007-77926021
12	ZNF263	chr15:77923899-77927072	HEK293-T-REx	kidney:	n/a	chr15:77924758-77924767 chr15:77926052-77926061 chr15:77925322-77925331 chr15:77926338-77926347
13	POLR2A	chr15:77925508-77925981	K562	blood:	n/a	n/a
14	POLR2A	chr15:77925160-77926258	SK-N-MC	brain:	n/a	n/a
15	CTCF	chr15:77925418-77926460	MCF-7	breast:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028 chr15:77926344-77926353
16	ZNF263	chr15:77924464-77926639	K562	blood:	n/a	chr15:77924758-77924767 chr15:77926052-77926061 chr15:77925322-77925331 chr15:77926338-77926347
17	BCL3	chr15:77925412-77926262	A549	lung:	n/a	chr15:77925420-77925433
18	MXI1	chr15:77925361-77926571	IMR90	lung:	n/a	n/a
19	TCF12	chr15:77925470-77926193	ECC-1	luminal epithelium:	n/a	chr15:77926169-77926179 chr15:77925956-77925966
20	MAX	chr15:77925431-77926105	SK-N-SH	brain:	n/a	chr15:77925671-77925678
21	CTCF	chr15:77925376-77926506	HCT-116	colon:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926007-77926028 chr15:77926344-77926353
22	E2F6	chr15:77925342-77926317	H1-hESC	embryonic stem cell:	n/a	n/a
23	E2F6	chr15:77924623-77926157	K562	blood:	n/a	chr15:77924787-77924801
24	MYC	chr15:77925148-77926186	K562	blood:	n/a	chr15:77925671-77925678
25	MAZ	chr15:77925053-77926446	IMR90	lung:	n/a	chr15:77925671-77925678 chr15:77926409-77926419
26	MAX	chr15:77925367-77926267	ECC-1	luminal epithelium:	n/a	chr15:77925671-77925678
27	CTCF	chr15:77925217-77927134	HCT-116	colon:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77926951-77926960 chr15:77926948-77926966 chr15:77926950-77926971 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926951-77926964 chr15:77926007-77926028 chr15:77926344-77926353
28	ZNF143	chr15:77925145-77927535	H1-hESC	embryonic stem cell:	n/a	chr15:77925310-77925328 chr15:77927084-77927103 chr15:77927155-77927173 chr15:77926483-77926501
29	ZBTB7A	chr15:77925234-77926238	ECC-1	luminal epithelium:	n/a	n/a
30	MAX	chr15:77925072-77926605	H1-hESC	embryonic stem cell:	n/a	chr15:77925671-77925678 chr15:77926530-77926539 chr15:77926409-77926419
31	MAX	chr15:77925154-77926167	K562	blood:	n/a	chr15:77925671-77925678
32	CTCF	chr15:77925480-77925630	Caco-2	colon:	n/a	n/a
33	YY1	chr15:77925496-77926152	K562	blood:	n/a	n/a
34	CTBP2	chr15:77925487-77927481	H1-hESC	embryonic stem cell:	n/a	n/a
35	MYC	chr15:77925163-77926193	K562	blood:	n/a	chr15:77925671-77925678
36	ELF1	chr15:77925421-77926194	GM12878	blood:	n/a	n/a
37	POLR2A	chr15:77925021-77926173	H1-neurons	neurons:	n/a	n/a
38	MAX	chr15:77925394-77926221	MCF-7	breast:	n/a	chr15:77925671-77925678
39	ZBTB7A	chr15:77924134-77925615	K562	blood:	n/a	chr15:77924145-77924152 chr15:77924395-77924403
40	MAX	chr15:77925368-77926201	MCF-7	breast:	n/a	chr15:77925671-77925678
41	CCNT2	chr15:77925101-77926149	K562	blood:	n/a	chr15:77925365-77925374
42	CTCF	chr15:77924998-77927629	SK-N-SH	brain:	n/a	chr15:77926005-77926023 chr15:77925949-77925962 chr15:77925947-77925963 chr15:77926008-77926021 chr15:77926951-77926960 chr15:77926948-77926966 chr15:77926950-77926971 chr15:77925946-77925964 chr15:77925948-77925969 chr15:77926951-77926964 chr15:77926007-77926028 chr15:77926344-77926353
43	RAD21	chr15:77925015-77926561	SK-N-SH	brain:	n/a	chr15:77926011-77926021 chr15:77925950-77925963 chr15:77926006-77926025 chr15:77925952-77925964 chr15:77926007-77926021 chr15:77925947-77925966 chr15:77925870-77925880 chr15:77926009-77926022 chr15:77925994-77926008 chr15:77926011-77926023
44	RCOR1	chr15:77925182-77926212	K562	blood:	n/a	n/a
45	CTCF	chr15:77925440-77925590	NHEK	skin:	n/a	n/a
46	POLR2A	chr15:77925097-77927030	H1-hESC	embryonic stem cell:	n/a	n/a
47	MAX	chr15:77925289-77926255	ECC-1	luminal epithelium:	n/a	chr15:77925671-77925678
48	ELF1	chr15:77925458-77926320	MCF-7	breast:	n/a	n/a
49	CTCF	chr15:77925480-77925630	A549	lung:	n/a	n/a
50	ATF2	chr15:77925461-77927008	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:77925481-77925531	T-47D	breast:	n/a
2	chr15:77925481-77925531	AG09319	gingival:	n/a
3	chr15:77925481-77925531	MCF-7	breast:	n/a
4	chr15:77925481-77925531	SKMC	muscle:	n/a
5	chr15:77925481-77925531	GM12878	blood:	n/a
6	chr15:77925481-77925531	AG04450	lung:	fetal
7	chr15:77925481-77925531	NT2-D1	testis:	n/a
8	chr15:77925481-77925531	HIPEpiC	eye:	n/a
9	chr15:77925481-77925531	GM06990	blood:	n/a
10	chr15:77925481-77925531	PANC-1	pancreas:	n/a
11	chr15:77925481-77925531	K562	blood:	n/a
12	chr15:77925481-77925531	HCF	heart:	n/a
13	chr15:77925481-77925531	HPAEpiC	pulmonary alveolar:	n/a
14	chr15:77925481-77925531	NHBE	bronchial:	n/a
15	chr15:77925481-77925531	NH-A	brain:	n/a
16	chr15:77925481-77925531	Caco-2	colon:	n/a
17	chr15:77925481-77925531	IMR90	lung:	fetal
18	chr15:77925481-77925531	AG09309	skin:	n/a
19	chr15:77925481-77925531	RPTEC	kidney:	n/a
20	chr15:77925481-77925531	BJ	skin:	n/a
21	chr15:77925481-77925531	HRCEpiC	kidney:	n/a
22	chr15:77925481-77925531	Hela-S3	cervix:	n/a
23	chr15:77925481-77925531	AG04449	skin:	fetal
24	chr15:77925481-77925531	HCT-116	colon:	n/a
25	chr15:77925481-77925531	HCPEpiC	choroid plexus:	n/a
26	chr15:77925481-77925531	BE2_C	brain:	n/a
27	chr15:77925481-77925531	SK-N-MC	brain:	n/a
28	chr15:77925481-77925531	U87	brain:	n/a
29	chr15:77925481-77925531	ProgFib	skin:	n/a
30	chr15:77925481-77925531	LNCaP	prostate:	n/a
31	chr15:77925481-77925531	SK-N-SH	brain:	n/a
32	chr15:77925481-77925531	HEEpiC	esophagus:	n/a
33	chr15:77925481-77925531	A549	lung:	n/a
34	chr15:77925481-77925531	HRPEpiC	eye:	n/a
35	chr15:77925481-77925531	HL-60	blood:	n/a
36	chr15:77925481-77925531	HNPCEpiC	eye:	n/a
37	chr15:77925481-77925531	CMK	blood:	n/a
38	chr15:77925481-77925531	Hepatocyte	liver:	n/a
39	chr15:77925481-77925531	GM12891	blood:	n/a
40	chr15:77925481-77925531	SK-N-SH_RA	brain:	n/a
41	chr15:77925481-77925531	PrEC	prostate:	n/a
42	chr15:77925481-77925531	AoSMC	blood vessel:	n/a
43	chr15:77925481-77925531	HepG2	liver:	n/a
44	chr15:77925481-77925531	HCM	heart:	n/a
45	chr15:77925481-77925531	HUVEC	blood vessel:	n/a
46	chr15:77925481-77925531	GM12892	blood:	n/a
47	chr15:77925481-77925531	ECC-1	luminal epithelium:	n/a
48	chr15:77925481-77925531	PFSK-1	brain:	n/a
49	chr15:77925481-77925531	HAEpiC	amniotic membrane:	n/a
50	chr15:77925481-77925531	Jurkat	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77912527..77913180-chr15:77925436..77926049,2	MCF-7	breast:
2	chr15:77912184..77913186-chr15:77925455..77926450,5	K562	blood:
3	chr15:77925249..77927257-chr15:78113205..78115049,24	MCF-7	breast:
4	chr15:77925299..77927652-chr15:78112444..78114100,3	MCF-7	breast:
5	chr15:77925435..77927439-chr15:78112259..78115090,22	K562	blood:
6	chr15:77835764..77836461-chr15:77925509..77926265,4	MCF-7	breast:
7	chr15:77923251..77928296-chr15:78111448..78115771,8	MCF-7	breast:
8	chr15:77924601..77927275-chr15:77937272..77938910,2	K562	blood:
9	chr15:77925397..77928069-chr15:78112259..78116246,3	K562	blood:
10	chr15:77478486..77479274-chr15:77925458..77926114,2	MCF-7	breast:
11	chr15:77925072..77927787-chr15:78111223..78115888,59	MCF-7	breast:
12	chr15:77909817..77910574-chr15:77925500..77926398,3	MCF-7	breast:
13	chr15:77925509..77926398-chr15:78076937..78077835,4	K562	blood:
14	chr15:77925492..77926460-chr15:77947054..77947731,3	K562	blood:
15	chr15:77924941..77926828-chr15:77932359..77934227,2	MCF-7	breast:
16	chr15:77925397..77927315-chr15:78112259..78115116,2	K562	blood:
17	chr15:77922761..77925687-chr15:77933695..77936379,3	K562	blood:
18	chr15:77925387..77926440-chr15:77951721..77952677,7	MCF-7	breast:

Variant related genes	Relation type
LINGO1	TF binding region
LINGO1	CpG island
ENSG00000169783	Chromatin interaction
ENSG00000259666	Chromatin interaction
ENSG00000259281	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv20199	chr15:77923484-77925974	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3327337	chr15:77923947-77926345	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3355911	chr15:77924122-77926670	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3403357	chr15:77924447-77926045	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77923000-77927400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr15:77923200-77925600	Active TSS	Ovary	ovary
3	chr15:77923400-77926000	Active TSS	Brain Anterior Caudate	brain
4	chr15:77923400-77926000	Active TSS	Brain Substantia Nigra	brain
5	chr15:77923400-77927600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr15:77923600-77926000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:77923600-77926400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:77923600-77926600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr15:77923800-77925600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:77924000-77927600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:77924400-77925600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr15:77924400-77925600	Active TSS	Left Ventricle	heart
13	chr15:77924400-77925600	Bivalent/Poised TSS	HepG2	liver
14	chr15:77924400-77926000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:77924400-77926000	Active TSS	Brain Cingulate Gyrus	brain
16	chr15:77924400-77926000	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr15:77924400-77926200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:77924400-77926200	Active TSS	Brain Angular Gyrus	brain
19	chr15:77924400-77926600	Active TSS	H1 Cell Line	embryonic stem cell
20	chr15:77924400-77926600	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr15:77924600-77925600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:77924600-77925600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:77924600-77925600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:77924600-77925600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:77924600-77925600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:77924600-77925600	Bivalent/Poised TSS	Fetal Stomach	stomach
27	chr15:77924600-77925600	Active TSS	Pancreas	Pancrea
28	chr15:77924600-77926000	Active TSS	Aorta	Aorta
29	chr15:77924600-77926000	Active TSS	Psoas Muscle	Psoas
30	chr15:77924600-77926000	Bivalent/Poised TSS	Thymus	Thymus
31	chr15:77924600-77926000	Active TSS	A549	lung
32	chr15:77924600-77926000	Bivalent/Poised TSS	HSMM	muscle
33	chr15:77924600-77926000	Active TSS	K562	blood
34	chr15:77924600-77926600	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr15:77924600-77927000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr15:77924600-77927400	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr15:77924600-77927600	Enhancers	Fetal Heart	heart
38	chr15:77924800-77925600	Active TSS	Brain Hippocampus Middle	brain
39	chr15:77924800-77925600	Bivalent/Poised TSS	Esophagus	oesophagus
40	chr15:77924800-77925600	Active TSS	Fetal Brain Female	brain
41	chr15:77924800-77926400	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr15:77925000-77925600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:77925000-77925800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr15:77925200-77925600	Active TSS	Primary B cells from peripheral blood	blood
45	chr15:77925200-77925600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
46	chr15:77925200-77925600	Bivalent/Poised TSS	HUVEC	blood vessel
47	chr15:77925200-77925800	Flanking Bivalent TSS/Enh	HMEC	breast
48	chr15:77925200-77926000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
49	chr15:77925200-77926000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr15:77925200-77926000	Transcr. at gene 5' and 3'	Right Atrium	heart

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