Variant report

Variant	rs558001179
Chromosome Location	chr15:77924409-77924410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77923251..77928296-chr15:78111448..78115771,8	MCF-7	breast:
2	chr15:77922761..77925687-chr15:77933695..77936379,3	K562	blood:

Variant related genes	Relation type
ENSG00000259666	Chromatin interaction
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv20199	chr15:77923484-77925974	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3327337	chr15:77923947-77926345	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3355911	chr15:77924122-77926670	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77922600-77924800	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr15:77923000-77924600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:77923000-77924600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:77923000-77924600	Bivalent Enhancer	Fetal Heart	heart
5	chr15:77923000-77927400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr15:77923200-77924600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:77923200-77924600	Bivalent/Poised TSS	Fetal Kidney	kidney
8	chr15:77923200-77924600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
9	chr15:77923200-77924600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
10	chr15:77923200-77925600	Active TSS	Ovary	ovary
11	chr15:77923400-77924600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
12	chr15:77923400-77924800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:77923400-77924800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
14	chr15:77923400-77926000	Active TSS	Brain Anterior Caudate	brain
15	chr15:77923400-77926000	Active TSS	Brain Substantia Nigra	brain
16	chr15:77923400-77927600	Active TSS	H9 Cell Line	embryonic stem cell
17	chr15:77923600-77924600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:77923600-77924600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
19	chr15:77923600-77924600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
20	chr15:77923600-77924600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
21	chr15:77923600-77926000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:77923600-77926400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:77923600-77926600	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr15:77923800-77924600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:77923800-77924600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:77923800-77924600	Flanking Active TSS	K562	blood
27	chr15:77923800-77925200	Active TSS	Right Ventricle	heart
28	chr15:77923800-77925600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr15:77924000-77924600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:77924000-77924600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr15:77924000-77924800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:77924000-77924800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
33	chr15:77924000-77925200	Active TSS	Right Atrium	heart
34	chr15:77924000-77927600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:77924200-77924600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:77924200-77924600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
37	chr15:77924200-77924600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:77924200-77924600	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
39	chr15:77924200-77924600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
40	chr15:77924200-77924600	Flanking Active TSS	Pancreas	Pancrea
41	chr15:77924200-77924600	Flanking Bivalent TSS/Enh	A549	lung
42	chr15:77924200-77924800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:77924200-77924800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
44	chr15:77924200-77924800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
45	chr15:77924200-77925200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
46	chr15:77924400-77924600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr15:77924400-77924600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr15:77924400-77924600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
49	chr15:77924400-77924600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
50	chr15:77924400-77924600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood

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