Variant report

Variant	rs538258221
Chromosome Location	chr15:55879406-55879407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv1041635	chr15:55658171-55943942	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv833016	chr15:55749169-55897906	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1049774	chr15:55759573-56044600	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv569540	chr15:55866065-55950082	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	esv3373041	chr15:55878885-55882033	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55877400-55881600	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr15:55878000-55879800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:55878200-55879800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:55878200-55879800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:55878200-55879800	Flanking Active TSS	Fetal Brain Male	brain
6	chr15:55878400-55879800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:55878400-55880200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
8	chr15:55878400-55881600	Active TSS	Stomach Smooth Muscle	stomach
9	chr15:55878400-55881800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr15:55878600-55879600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:55878800-55879600	Flanking Active TSS	Fetal Lung	lung
12	chr15:55878800-55880000	Flanking Active TSS	HUVEC	blood vessel
13	chr15:55878800-55881400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
14	chr15:55878800-55881600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr15:55878800-55881600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:55878800-55881800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:55879000-55879600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:55879000-55879600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
19	chr15:55879000-55879600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
20	chr15:55879000-55879600	Active TSS	Rectal Smooth Muscle	rectum
21	chr15:55879000-55881000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
22	chr15:55879000-55881200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:55879000-55881400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:55879000-55881400	Active TSS	Psoas Muscle	Psoas
25	chr15:55879000-55881600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:55879000-55881600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr15:55879000-55881600	Active TSS	Ovary	ovary
28	chr15:55879000-55881600	Active TSS	HSMM	muscle
29	chr15:55879200-55879600	Flanking Active TSS	Fetal Brain Female	brain
30	chr15:55879200-55879600	Flanking Active TSS	Fetal Heart	heart
31	chr15:55879200-55881000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:55879200-55881000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
33	chr15:55879200-55881000	Active TSS	Fetal Muscle Leg	muscle
34	chr15:55879200-55881200	Active TSS	Muscle Satellite Cultured Cells	--
35	chr15:55879200-55881200	Active TSS	A549	lung
36	chr15:55879200-55881400	Active TSS	Fetal Stomach	stomach
37	chr15:55879200-55881400	Active TSS	NHLF	lung
38	chr15:55879200-55881600	Active TSS	NH-A	brain
39	chr15:55879200-55881800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:55879200-55881800	Active TSS	NHDF-Ad	bronchial
41	chr15:55879400-55879600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
42	chr15:55879400-55879600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:55879400-55879600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:55879400-55879600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr15:55879400-55879600	Bivalent Enhancer	Brain Angular Gyrus	brain
46	chr15:55879400-55879600	Active TSS	Fetal Muscle Trunk	muscle
47	chr15:55879400-55879600	Weak transcription	Placenta	Placenta
48	chr15:55879400-55879600	Active TSS	HSMMtube	muscle
49	chr15:55879400-55879800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:55879400-55879800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood

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