Variant report

Variant	rs539885466
Chromosome Location	chr6:149888953-149888954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149887497..149889067-chr6:149953634..149955368,2	K562	blood:
2	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
3	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
4	chr6:149888124..149890319-chr6:149910443..149912439,2	MCF-7	breast:
5	chr6:149887413..149889033-chr6:149958089..149960817,2	K562	blood:
6	chr6:149887503..149889427-chr6:149890997..149894118,3	MCF-7	breast:
7	chr6:149884132..149889842-chr6:149966518..149971305,10	K562	blood:
8	chr6:149887426..149891060-chr6:150037726..150040656,4	K562	blood:
9	chr6:149884836..149889436-chr6:149966369..149971850,7	K562	blood:
10	chr6:149884840..149889202-chr6:150038504..150040931,4	K562	blood:
11	chr6:149887638..149889418-chr6:149897443..149899421,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3350697	chr6:149888593-149889334	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149886400-149889200	Active TSS	GM12878-XiMat	blood
2	chr6:149886800-149889000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:149886800-149889000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:149888000-149889000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:149888200-149889000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:149888200-149889000	Flanking Active TSS	Dnd41	blood
7	chr6:149888200-149889200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:149888400-149889000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr6:149888400-149889000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:149888400-149889000	Enhancers	Stomach Mucosa	stomach
11	chr6:149888400-149889000	Flanking Active TSS	Hela-S3	cervix
12	chr6:149888400-149889000	Flanking Active TSS	HepG2	liver
13	chr6:149888400-149889200	Weak transcription	Psoas Muscle	Psoas
14	chr6:149888400-149889400	Enhancers	Fetal Heart	heart
15	chr6:149888400-149889400	Enhancers	Spleen	Spleen
16	chr6:149888400-149889600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:149888400-149889600	Enhancers	Small Intestine	intestine
18	chr6:149888400-149893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:149888400-149893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:149888400-149894200	Weak transcription	Ovary	ovary
21	chr6:149888400-149897400	Weak transcription	Lung	lung
22	chr6:149888400-149901600	Weak transcription	Aorta	Aorta
23	chr6:149888400-149902000	Weak transcription	Gastric	stomach
24	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:149888600-149889000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:149888600-149889000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:149888600-149889000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:149888600-149889000	Enhancers	Primary B cells from cord blood	blood
29	chr6:149888600-149889000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:149888600-149889000	Enhancers	Brain Hippocampus Middle	brain
31	chr6:149888600-149889000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:149888600-149889000	Enhancers	Fetal Muscle Leg	muscle
33	chr6:149888600-149889000	Enhancers	Placenta	Placenta
34	chr6:149888600-149889000	Enhancers	Pancreas	Pancrea
35	chr6:149888600-149889000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr6:149888600-149889000	Enhancers	HMEC	breast
37	chr6:149888600-149889000	Enhancers	HSMMtube	muscle
38	chr6:149888600-149889000	Enhancers	HUVEC	blood vessel
39	chr6:149888600-149889000	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr6:149888600-149889000	Enhancers	NHDF-Ad	bronchial
41	chr6:149888600-149889000	Enhancers	Osteobl	bone
42	chr6:149888600-149889200	Enhancers	Brain Cingulate Gyrus	brain
43	chr6:149888600-149889200	Enhancers	Fetal Lung	lung
44	chr6:149888600-149889400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:149888600-149889400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr6:149888600-149889400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:149888600-149889400	Enhancers	Liver	Liver
48	chr6:149888600-149889400	Weak transcription	Brain Anterior Caudate	brain
49	chr6:149888600-149889400	Enhancers	Colon Smooth Muscle	Colon
50	chr6:149888600-149889400	Enhancers	Fetal Stomach	stomach

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