Variant report

Variant	rs539939620
Chromosome Location	chr11:93862824-93862825
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93860234..93863458-chr11:94225545..94228425,3	K562	blood:
2	chr11:93724420..93726827-chr11:93860849..93862959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255995	Chromatin interaction
ENSG00000020922	Chromatin interaction
ENSG00000168876	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv523082	chr11:93834223-93866147	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv989619	chr11:93861937-93872912	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93860800-93863200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:93861000-93863200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:93861000-93863200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr11:93861000-93863200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:93861000-93863400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr11:93861000-93863600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:93861000-93863600	Active TSS	A549	lung
8	chr11:93861200-93863000	Active TSS	Right Atrium	heart
9	chr11:93861200-93863200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:93861200-93863200	Active TSS	H9 Cell Line	embryonic stem cell
11	chr11:93861200-93863200	Active TSS	Ovary	ovary
12	chr11:93861200-93863200	Active TSS	Right Ventricle	heart
13	chr11:93861200-93863200	Active TSS	NHDF-Ad	bronchial
14	chr11:93861200-93863600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:93861200-93863600	Active TSS	Placenta Amnion	Placenta Amnion
16	chr11:93861200-93863600	Active TSS	Psoas Muscle	Psoas
17	chr11:93861200-93864400	Active TSS	Aorta	Aorta
18	chr11:93861400-93863000	Active TSS	H1 Cell Line	embryonic stem cell
19	chr11:93861400-93863000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:93861400-93863000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:93861400-93863000	Active TSS	Fetal Kidney	kidney
22	chr11:93861400-93863000	Active TSS	Rectal Smooth Muscle	rectum
23	chr11:93861400-93863000	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr11:93861400-93863000	Active TSS	Small Intestine	intestine
25	chr11:93861400-93863200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:93861400-93863200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:93861400-93863200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr11:93861400-93863200	Active TSS	Gastric	stomach
29	chr11:93861400-93863400	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr11:93861400-93863400	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr11:93861400-93863400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:93861400-93863400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:93861400-93863600	Active TSS	HSMM	muscle
34	chr11:93861400-93863800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:93861400-93863800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:93861400-93863800	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr11:93861400-93864000	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr11:93861400-93864000	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr11:93861400-93864400	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr11:93861600-93863000	Active TSS	Brain Cingulate Gyrus	brain
41	chr11:93861600-93863000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
42	chr11:93861600-93863000	Active TSS	Colon Smooth Muscle	Colon
43	chr11:93861600-93863000	Active TSS	Fetal Brain Male	brain
44	chr11:93861600-93863000	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:93861600-93863000	Active TSS	HMEC	breast
46	chr11:93861600-93863200	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr11:93861600-93863200	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr11:93861600-93863200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:93861600-93863200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:93861600-93863200	Active TSS	Left Ventricle	heart

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