Variant report

Variant	rs540186565
Chromosome Location	chr15:55880109-55880110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv1041635	chr15:55658171-55943942	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv833016	chr15:55749169-55897906	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1049774	chr15:55759573-56044600	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv569540	chr15:55866065-55950082	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	esv3373041	chr15:55878885-55882033	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv3328504	chr15:55879460-55881833	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55877400-55881600	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr15:55878400-55880200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
3	chr15:55878400-55881600	Active TSS	Stomach Smooth Muscle	stomach
4	chr15:55878400-55881800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr15:55878800-55881400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
6	chr15:55878800-55881600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr15:55878800-55881600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:55878800-55881800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:55879000-55881000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr15:55879000-55881200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:55879000-55881400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:55879000-55881400	Active TSS	Psoas Muscle	Psoas
13	chr15:55879000-55881600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:55879000-55881600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
15	chr15:55879000-55881600	Active TSS	Ovary	ovary
16	chr15:55879000-55881600	Active TSS	HSMM	muscle
17	chr15:55879200-55881000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:55879200-55881000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
19	chr15:55879200-55881000	Active TSS	Fetal Muscle Leg	muscle
20	chr15:55879200-55881200	Active TSS	Muscle Satellite Cultured Cells	--
21	chr15:55879200-55881200	Active TSS	A549	lung
22	chr15:55879200-55881400	Active TSS	Fetal Stomach	stomach
23	chr15:55879200-55881400	Active TSS	NHLF	lung
24	chr15:55879200-55881600	Active TSS	NH-A	brain
25	chr15:55879200-55881800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:55879200-55881800	Active TSS	NHDF-Ad	bronchial
27	chr15:55879400-55880400	Bivalent/Poised TSS	NHEK	skin
28	chr15:55879400-55880800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:55879400-55881200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr15:55879400-55881200	Active TSS	Brain Germinal Matrix	brain
31	chr15:55879400-55881200	Active TSS	Placenta Amnion	Placenta Amnion
32	chr15:55879400-55881400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr15:55879400-55881400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
34	chr15:55879400-55881400	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr15:55879400-55881400	Active TSS	Aorta	Aorta
36	chr15:55879400-55881400	Active TSS	Brain Anterior Caudate	brain
37	chr15:55879400-55881400	Active TSS	Colon Smooth Muscle	Colon
38	chr15:55879400-55881400	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr15:55879400-55881400	Active TSS	Right Atrium	heart
40	chr15:55879400-55881400	Active TSS	Right Ventricle	heart
41	chr15:55879400-55881600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
42	chr15:55879400-55881600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:55879400-55881600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
44	chr15:55879400-55881600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
45	chr15:55879400-55881600	Active TSS	Fetal Kidney	kidney
46	chr15:55879400-55881600	Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr15:55879400-55881800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:55879400-55881800	Active TSS	Osteobl	bone
49	chr15:55879600-55880200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:55879600-55880200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood

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