Variant report

Variant	rs540315082
Chromosome Location	chr12:40883618-40883619
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:40882994..40885029-chr12:40904694..40907438,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40879237-40885130	NONHSAT027728

Extended variants
information (count: 38 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv1848303	chr12:40867011-40887238	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1850439	chr12:40867211-40887867	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv20428	chr12:40867874-40884927	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1827225	chr12:40873026-40894172	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1833623	chr12:40873026-40894172	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv821471	chr12:40873057-40885132	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv16680	chr12:40873057-40885157	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv1820410	chr12:40874860-40883745	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv558628	chr12:40874860-40883745	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1834493	chr12:40874860-40884744	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv1807063	chr12:40874912-40883745	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv558635	chr12:40874912-40884881	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv558645	chr12:40875014-40884744	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv558662	chr12:40875303-40883745	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv558663	chr12:40875303-40884881	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv558669	chr12:40875351-40884744	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv558690	chr12:40876644-40883745	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv558691	chr12:40876644-40884403	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv558693	chr12:40877007-40884403	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv8969	chr12:40877065-40884382	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv2427709	chr12:40877987-40884242	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv3366195	chr12:40878095-40883943	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv558694	chr12:40878452-40883745	ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv558695	chr12:40879177-40884403	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv437747	chr12:40880060-40884666	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	nsv437748	chr12:40880060-40884666	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	nsv437749	chr12:40880060-40884666	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv437750	chr12:40880060-40884666	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	esv3372529	chr12:40880885-40885083	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	esv996769	chr12:40881764-40886597	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	esv3504985	chr12:40881842-40883746	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	esv3504996	chr12:40881842-40883746	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	esv3490055	chr12:40881865-40883795	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	esv3490056	chr12:40881889-40883697	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	esv3490057	chr12:40881889-40883697	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	esv996068	chr12:40881956-40883635	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	esv3445765	chr12:40883611-40884468	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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