Variant report

Variant	rs540550753
Chromosome Location	chr15:58725207-58725208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv2760372	chr15:58721447-58731153	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2761874	chr15:58724371-58730571	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58704600-58728800	Weak transcription	Thymus	Thymus
2	chr15:58716600-58725800	Weak transcription	Right Atrium	heart
3	chr15:58716600-58726600	Weak transcription	Esophagus	oesophagus
4	chr15:58718400-58726600	Weak transcription	Stomach Mucosa	stomach
5	chr15:58719600-58725800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:58722600-58731000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:58724000-58725800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:58724000-58725800	Weak transcription	Pancreas	Pancrea
9	chr15:58724200-58726400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:58724200-58727000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:58724200-58727200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:58724400-58725400	Active TSS	Liver	Liver
13	chr15:58724400-58725600	Weak transcription	Fetal Intestine Small	intestine
14	chr15:58724400-58725600	Weak transcription	Right Ventricle	heart
15	chr15:58724400-58726200	Weak transcription	Fetal Thymus	thymus
16	chr15:58724400-58726600	Enhancers	Adipose Nuclei	Adipose
17	chr15:58724400-58726800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:58724400-58726800	Enhancers	HSMMtube	muscle
19	chr15:58724600-58725800	Weak transcription	Placenta	Placenta
20	chr15:58724600-58726200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:58724600-58731000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:58724800-58725400	Flanking Active TSS	HepG2	liver
23	chr15:58724800-58725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:58724800-58725800	Weak transcription	HSMM	muscle
25	chr15:58724800-58726000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:58724800-58726400	Enhancers	A549	lung
27	chr15:58724800-58731200	Weak transcription	NHDF-Ad	bronchial
28	chr15:58724800-58732600	Weak transcription	Psoas Muscle	Psoas
29	chr15:58725000-58725400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:58725000-58725400	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr15:58725000-58725800	Enhancers	Fetal Kidney	kidney
32	chr15:58725000-58726400	Enhancers	Hela-S3	cervix
33	chr15:58725000-58727200	Enhancers	Brain Hippocampus Middle	brain
34	chr15:58725000-58729200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:58725000-58730000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:58725000-58731000	Weak transcription	Fetal Intestine Large	intestine
37	chr15:58725000-58731000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:58725200-58725400	Weak transcription	Fetal Lung	lung
39	chr15:58725200-58725400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:58725200-58726600	Enhancers	Brain Cingulate Gyrus	brain
41	chr15:58725200-58729800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:58725200-58732000	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links