Variant report

Variant	rs540622594
Chromosome Location	chr6:167836658-167836659
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1032268	chr6:167569519-167838993	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv470873	chr6:167572542-167844264	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1019368	chr6:167594182-167838993	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2757201	chr6:167600593-168176733	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv886946	chr6:167644277-168078883	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv482516	chr6:167672161-167845924	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3693361	chr6:167680649-168179170	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv482733	chr6:167696378-167845935	Bivalent Enhancer Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv427771	chr6:167696379-167845513	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv886950	chr6:167783664-168056843	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1019214	chr6:167795824-168205855	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv886954	chr6:167814784-168056843	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv511342	chr6:167830685-167838940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv1811838	chr6:167832036-167837342	Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1843256	chr6:167832036-168136483	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	esv1809948	chr6:167833557-168135849	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv605350	chr6:167833634-167838940	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	lncRNA	n/a	inside rSNPs	diseases
21	esv3406794	chr6:167833987-167838135	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
22	esv14813	chr6:167835212-167837366	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
23	esv1801903	chr6:167835252-167837342	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv1802443	chr6:167835252-167837342	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
25	esv1805355	chr6:167835252-167837342	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
26	esv1812336	chr6:167835252-167837342	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv1812749	chr6:167835252-167837342	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
28	esv1818607	chr6:167835252-167837342	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
29	esv1822024	chr6:167835252-167837342	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
30	esv1828435	chr6:167835252-167837342	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
31	esv1834595	chr6:167835252-167837342	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
32	esv1842469	chr6:167835252-167837342	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
33	esv1842928	chr6:167835252-167837342	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
34	nsv605352	chr6:167835252-167837342	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
35	nsv605353	chr6:167835252-167838940	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
36	nsv605354	chr6:167835252-167838993	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
37	nsv605355	chr6:167835252-167841508	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
38	nsv605356	chr6:167835252-167843366	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
39	esv1800941	chr6:167835252-168135849	Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
40	esv1840857	chr6:167835252-168135849	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
41	esv1845781	chr6:167835252-168136534	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
42	nsv605357	chr6:167835509-167837342	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
43	esv1794518	chr6:167835619-167837342	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
44	esv1851758	chr6:167835619-167837342	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
45	nsv605358	chr6:167835619-167837342	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	nsv605359	chr6:167835619-167838940	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
47	esv1794513	chr6:167835619-168136218	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
48	nsv605360	chr6:167836054-167837342	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
49	nsv605361	chr6:167836174-167837342	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
50	nsv605362	chr6:167836399-167837342	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167829600-167841400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:167829800-167842200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:167830400-167840200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:167834000-167839400	Weak transcription	Gastric	stomach
5	chr6:167834000-167846400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:167834800-167839400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:167835000-167839000	Weak transcription	Lung	lung
8	chr6:167835000-167845800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:167835200-167837600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:167835200-167840200	Weak transcription	Stomach Mucosa	stomach
11	chr6:167835200-167851800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:167835200-167856000	Weak transcription	Right Atrium	heart
13	chr6:167835400-167837400	Weak transcription	HepG2	liver
14	chr6:167835400-167837600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:167835400-167839200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:167835400-167839400	Weak transcription	Colonic Mucosa	Colon
17	chr6:167836400-167837000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:167836600-167836800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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