Variant report

Variant	rs541201381
Chromosome Location	chr19:21717254-21717255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv510759	chr19:21664791-21723191	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2762028	chr19:21685778-21755476	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv963024	chr19:21686690-21722618	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1059328	chr19:21691123-21775948	Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv543942	chr19:21711611-21767567	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv543943	chr19:21713945-21759080	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv543944	chr19:21713945-21767567	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3318010	chr19:21716960-21717453	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
17	esv6839	chr19:21716963-21717472	Strong transcription ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3510842	chr19:21716989-21717490	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
19	esv3510843	chr19:21717009-21717448	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
20	esv3318009	chr19:21717020-21717416	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
21	esv3318011	chr19:21717022-21717439	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
22	esv3318008	chr19:21717032-21717369	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
23	esv3318006	chr19:21717082-21717346	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv3447546	chr19:21717094-21717341	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv3318012	chr19:21717096-21717345	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3510844	chr19:21717096-21717345	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21699600-21720800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr19:21699600-21727600	ZNF genes & repeats	Liver	Liver
3	chr19:21701000-21733400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:21701600-21720400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr19:21702400-21721400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:21702800-21718600	Weak transcription	Colon Smooth Muscle	Colon
7	chr19:21702800-21718600	Weak transcription	Fetal Heart	heart
8	chr19:21705000-21718600	Weak transcription	HSMM	muscle
9	chr19:21707000-21719000	Weak transcription	Stomach Mucosa	stomach
10	chr19:21708200-21717400	Strong transcription	Placenta	Placenta
11	chr19:21709000-21722800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:21711600-21720400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr19:21711800-21717400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:21712000-21719200	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr19:21712400-21720400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
16	chr19:21712600-21720200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
17	chr19:21713400-21717400	Strong transcription	Brain Germinal Matrix	brain
18	chr19:21713400-21719600	Strong transcription	Ovary	ovary
19	chr19:21713400-21720200	ZNF genes & repeats	Fetal Intestine Large	intestine
20	chr19:21713400-21720400	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr19:21713400-21720800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:21713400-21720800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:21713400-21721800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr19:21713400-21722000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
25	chr19:21713400-21722800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr19:21714200-21717400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr19:21714200-21718600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr19:21714200-21718600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr19:21714200-21721200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr19:21714400-21717400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr19:21714400-21718400	Weak transcription	Brain Hippocampus Middle	brain
32	chr19:21714400-21718800	Weak transcription	Brain Substantia Nigra	brain
33	chr19:21714400-21719000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr19:21714600-21723000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
35	chr19:21714800-21717600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:21715000-21717600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
37	chr19:21715200-21717600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
38	chr19:21715200-21720600	ZNF genes & repeats	Fetal Lung	lung
39	chr19:21715200-21728600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr19:21715400-21717600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr19:21715400-21718600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr19:21715400-21718600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr19:21715800-21717600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
44	chr19:21715800-21719400	Weak transcription	Right Ventricle	heart
45	chr19:21715800-21720800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr19:21716000-21717600	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr19:21716200-21717400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
48	chr19:21716200-21718600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr19:21716200-21720400	ZNF genes & repeats	Dnd41	blood
50	chr19:21716200-21722600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links