Variant report

Variant	rs541435045
Chromosome Location	chr14:35684267-35684268
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35683888..35684924-chr14:35876205..35876767,3	MCF-7	breast:
2	chr14:35680408..35687771-chr14:35868773..35877509,15	MCF-7	breast:
3	chr14:35517575..35519344-chr14:35683138..35684908,2	MCF-7	breast:
4	chr14:35684138..35684885-chr14:35882171..35883033,3	MCF-7	breast:
5	chr14:35683927..35684734-chr14:35875633..35876485,2	MCF-7	breast:
6	chr14:35678489..35680179-chr14:35680593..35684377,3	MCF-7	breast:
7	chr14:35681343..35684647-chr14:35685694..35689200,4	MCF-7	breast:
8	chr14:35683362..35686230-chr14:35702094..35703639,2	MCF-7	breast:
9	chr14:35683180..35685889-chr14:35867098..35869368,3	MCF-7	breast:
10	chr14:35683125..35684934-chr14:35764206..35766874,2	MCF-7	breast:
11	chr14:35681682..35685352-chr14:35808762..35812906,3	MCF-7	breast:
12	chr14:35680958..35685764-chr14:35872472..35876074,7	MCF-7	breast:
13	chr14:35682480..35684429-chr17:58753496..58755947,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction
ENSG00000141376	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv1046992	chr14:35527239-35724227	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv1051274	chr14:35529529-35724227	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv1048823	chr14:35537281-35724892	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv542032	chr14:35537281-35724892	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv1040540	chr14:35537481-35724753	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv542033	chr14:35537481-35724753	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv1050123	chr14:35546114-35724892	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv542034	chr14:35546114-35724892	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv1043692	chr14:35548276-35720016	Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
17	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
18	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
19	nsv564314	chr14:35684196-35702857	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv564315	chr14:35684196-35703839	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35643400-35724000	Weak transcription	Left Ventricle	heart
2	chr14:35650600-35702600	Weak transcription	Liver	Liver
3	chr14:35650800-35707800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:35655800-35691800	Weak transcription	Psoas Muscle	Psoas
5	chr14:35661000-35690000	Weak transcription	Fetal Stomach	stomach
6	chr14:35661000-35736400	Weak transcription	Fetal Intestine Small	intestine
7	chr14:35670800-35691800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:35672000-35742200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:35672200-35690200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:35672200-35700000	Weak transcription	Thymus	Thymus
11	chr14:35673200-35688400	Weak transcription	Fetal Thymus	thymus
12	chr14:35673400-35688200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:35673600-35691200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr14:35674400-35698600	Weak transcription	Dnd41	blood
15	chr14:35674400-35699600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:35674400-35711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:35674800-35688000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr14:35674800-35737000	Weak transcription	Lung	lung
19	chr14:35675600-35691400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:35675600-35692200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr14:35675600-35699200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:35678000-35719600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr14:35679600-35699400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr14:35679800-35692000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:35679800-35699800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:35680000-35698600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:35680200-35691600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr14:35680400-35691800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr14:35680800-35688200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr14:35680800-35729800	Weak transcription	Primary B cells from cord blood	blood
31	chr14:35681000-35729800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:35681400-35684400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:35681600-35685000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:35681600-35690800	Weak transcription	Aorta	Aorta
35	chr14:35681800-35684600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:35682000-35684800	Enhancers	HepG2	liver
37	chr14:35682000-35684800	Enhancers	HMEC	breast
38	chr14:35682200-35684600	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr14:35682200-35684600	Enhancers	HSMM	muscle
40	chr14:35682200-35685000	Enhancers	A549	lung
41	chr14:35682400-35685000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr14:35682600-35684600	Enhancers	NHEK	skin
43	chr14:35682600-35685000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:35682600-35685000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:35682600-35688000	Weak transcription	Primary T cells from cord blood	blood
46	chr14:35682800-35684400	Enhancers	NHDF-Ad	bronchial
47	chr14:35682800-35684600	Enhancers	Osteobl	bone
48	chr14:35682800-35684800	Enhancers	HUVEC	blood vessel
49	chr14:35683000-35684400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr14:35683000-35685200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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