Variant report

Variant	rs541651425
Chromosome Location	chr9:7176619-7176620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv528873	chr9:7163530-7177936	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
9	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7148600-7185400	Weak transcription	HMEC	breast
2	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:7151800-7188600	Weak transcription	Colonic Mucosa	Colon
5	chr9:7160800-7182000	Weak transcription	Dnd41	blood
6	chr9:7162600-7181600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr9:7162600-7182200	Weak transcription	Small Intestine	intestine
8	chr9:7163200-7177800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr9:7163400-7180600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:7163800-7179000	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr9:7164600-7178000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr9:7165800-7179400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:7165800-7183800	Weak transcription	Esophagus	oesophagus
14	chr9:7165800-7185400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:7166200-7181000	Weak transcription	Hela-S3	cervix
16	chr9:7166400-7176800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:7167200-7185600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:7169200-7183000	Strong transcription	Primary T cells from cord blood	blood
19	chr9:7169600-7176800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:7169800-7176800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr9:7169800-7177600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:7171200-7188200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:7171200-7193000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:7172000-7182400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:7172000-7183800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr9:7172600-7185400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr9:7172800-7178600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:7172800-7185400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:7172800-7185400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr9:7172800-7185600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:7173000-7179000	Weak transcription	Brain Angular Gyrus	brain
32	chr9:7173000-7185600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:7173200-7176800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:7173200-7176800	Weak transcription	Fetal Brain Female	brain
35	chr9:7173200-7176800	Weak transcription	Fetal Kidney	kidney
36	chr9:7173200-7178600	Weak transcription	GM12878-XiMat	blood
37	chr9:7173200-7180200	Weak transcription	HSMMtube	muscle
38	chr9:7173200-7182400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:7173200-7185200	Weak transcription	NHLF	lung
40	chr9:7173200-7185400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:7173400-7179400	Weak transcription	Brain Substantia Nigra	brain
42	chr9:7173400-7185400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:7173400-7185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:7173400-7185800	Weak transcription	Brain Anterior Caudate	brain
45	chr9:7173400-7186200	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:7173400-7186400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:7173800-7178000	Strong transcription	Fetal Thymus	thymus
48	chr9:7174400-7179000	Strong transcription	Aorta	Aorta
49	chr9:7175000-7177200	Strong transcription	Osteobl	bone
50	chr9:7175000-7183600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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