The 2.0 version of rSNPBase

Variant report

Variant rs542015902
Chromosome Location chr7:38835909-38835910
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:38793400-38861200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr7:38800200-38837600 Weak transcription H9 Cell Line embryonic stem cell
3 chr7:38803200-38845400 Weak transcription Colonic Mucosa Colon
4 chr7:38803200-38846000 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr7:38804400-38836200 Weak transcription Fetal Brain Male brain
6 chr7:38813800-38836400 Weak transcription HUVEC blood vessel
7 chr7:38813800-38839600 Weak transcription Right Ventricle heart
8 chr7:38813800-38857400 Weak transcription HSMM muscle
9 chr7:38820000-38836600 Strong transcription Monocytes-CD14+_RO01746 blood
10 chr7:38822200-38837400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr7:38822400-38836400 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr7:38822400-38855200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr7:38824800-38836400 Strong transcription Primary B cells from cord blood blood
14 chr7:38825000-38837800 Weak transcription Fetal Heart heart
15 chr7:38825200-38836400 Strong transcription Primary B cells from peripheral blood blood
16 chr7:38825800-38836000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
17 chr7:38826200-38836400 Strong transcription Primary T helper cells fromperipheralblood blood
18 chr7:38827000-38836200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr7:38827200-38836400 Strong transcription Rectal Mucosa Donor 29 rectum
20 chr7:38827400-38836400 Strong transcription Primary hematopoietic stem cells short term culture blood
21 chr7:38828200-38836200 Strong transcription Primary neutrophils fromperipheralblood blood
22 chr7:38828600-38836400 Strong transcription Primary T regulatory cells fromperipheralblood blood
23 chr7:38829200-38837200 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr7:38829400-38836000 Weak transcription Fetal Brain Female brain
25 chr7:38829400-38836200 Weak transcription Fetal Kidney kidney
26 chr7:38829400-38836200 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr7:38829400-38836400 Weak transcription Brain Hippocampus Middle brain
28 chr7:38829400-38837200 Weak transcription Small Intestine intestine
29 chr7:38829400-38837400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr7:38829400-38837600 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr7:38829400-38837600 Weak transcription H1 Cell Line embryonic stem cell
32 chr7:38829400-38838200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr7:38829400-38839000 Weak transcription Gastric stomach
34 chr7:38829400-38841600 Weak transcription Osteobl bone
35 chr7:38829400-38846600 Weak transcription Brain Anterior Caudate brain
36 chr7:38829400-38846600 Weak transcription Brain Substantia Nigra brain
37 chr7:38829400-38846800 Weak transcription Brain Cingulate Gyrus brain
38 chr7:38829400-38854600 Weak transcription Left Ventricle heart
39 chr7:38829400-38855200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr7:38829400-38855600 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr7:38829400-38856400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr7:38829400-38864400 Weak transcription Thymus Thymus
43 chr7:38829400-38864600 Weak transcription NHLF lung
44 chr7:38829600-38837400 Weak transcription HepG2 liver
45 chr7:38829600-38838200 Weak transcription iPS-18 Cell Line embryonic stem cell
46 chr7:38829800-38838200 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr7:38830600-38836400 Strong transcription Primary T cells from cord blood blood
48 chr7:38830800-38836000 Weak transcription Colon Smooth Muscle Colon
49 chr7:38831000-38838000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr7:38831000-38838200 Weak transcription ES-WA7 Cell Line embryonic stem cell

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Last update: Aug 31, 2015