Variant report

Variant	rs543025999
Chromosome Location	chr19:21712196-21712197
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv510759	chr19:21664791-21723191	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2762028	chr19:21685778-21755476	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv963024	chr19:21686690-21722618	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1059328	chr19:21691123-21775948	Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv543942	chr19:21711611-21767567	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21699600-21720800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr19:21699600-21727600	ZNF genes & repeats	Liver	Liver
3	chr19:21701000-21733400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:21701600-21712600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:21701600-21720400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr19:21702400-21721400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:21702600-21713400	Weak transcription	Right Ventricle	heart
8	chr19:21702600-21713400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr19:21702600-21717200	Weak transcription	Psoas Muscle	Psoas
10	chr19:21702800-21713400	Weak transcription	Brain Angular Gyrus	brain
11	chr19:21702800-21717200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr19:21702800-21718600	Weak transcription	Colon Smooth Muscle	Colon
13	chr19:21702800-21718600	Weak transcription	Fetal Heart	heart
14	chr19:21703000-21713400	Weak transcription	Brain Anterior Caudate	brain
15	chr19:21704000-21714600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr19:21704000-21717200	Weak transcription	NHDF-Ad	bronchial
17	chr19:21704400-21714400	Strong transcription	Primary T cells from cord blood	blood
18	chr19:21705000-21714200	Weak transcription	Fetal Thymus	thymus
19	chr19:21705000-21718600	Weak transcription	HSMM	muscle
20	chr19:21705200-21713200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:21705200-21713600	Weak transcription	Brain Substantia Nigra	brain
22	chr19:21705400-21713400	Weak transcription	Brain Hippocampus Middle	brain
23	chr19:21705800-21713600	Weak transcription	Fetal Stomach	stomach
24	chr19:21706000-21713400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:21706000-21713400	Weak transcription	Fetal Kidney	kidney
26	chr19:21706000-21713400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr19:21706200-21713800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:21706400-21713600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr19:21706400-21714000	Weak transcription	Osteobl	bone
30	chr19:21706400-21717200	Weak transcription	K562	blood
31	chr19:21706600-21713400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr19:21706600-21713400	Weak transcription	Thymus	Thymus
33	chr19:21706800-21713000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr19:21706800-21713400	Weak transcription	HSMMtube	muscle
35	chr19:21707000-21713000	Weak transcription	Fetal Lung	lung
36	chr19:21707000-21713400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr19:21707000-21713400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr19:21707000-21714000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr19:21707000-21719000	Weak transcription	Stomach Mucosa	stomach
40	chr19:21707200-21713400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr19:21707200-21713800	Weak transcription	Fetal Brain Male	brain
42	chr19:21708200-21716200	Strong transcription	Dnd41	blood
43	chr19:21708200-21717400	Strong transcription	Placenta	Placenta
44	chr19:21709000-21722800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr19:21709400-21712200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr19:21709600-21716800	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr19:21709600-21717200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr19:21709800-21712600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
49	chr19:21710000-21713400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr19:21710000-21713600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links