Variant report

Variant	rs543888319
Chromosome Location	chr6:149866274-149866275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149858502..149860494-chr6:149865372..149866981,2	MCF-7	breast:
2	chr6:149638315..149640262-chr6:149865472..149868393,2	K562	blood:
3	chr6:149865631..149868201-chr6:150184694..150186592,2	MCF-7	breast:
4	chr6:149864573..149867229-chr6:150066856..150070071,3	K562	blood:
5	chr6:149863614..149866317-chr6:150041414..150044208,2	K562	blood:
6	chr6:149865819..149869096-chr6:149885709..149888757,8	MCF-7	breast:
7	chr6:149866078..149868116-chr6:151710633..151713290,2	MCF-7	breast:
8	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
9	chr6:149865491..149867139-chr6:149970977..149973867,2	K562	blood:
10	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
11	chr6:149864361..149868960-chr6:149967728..149970352,9	K562	blood:
12	chr6:149865589..149867401-chr6:150242514..150245357,2	MCF-7	breast:
13	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
14	chr6:149865412..149868638-chr6:150066732..150070347,4	K562	blood:
15	chr6:149865149..149869984-chr6:149967517..149970273,6	K562	blood:
16	chr6:149864025..149866491-chr6:150038497..150040918,2	K562	blood:
17	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
18	chr6:149864465..149868641-chr6:150037478..150040253,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000055211	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000235168	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000181472	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149865000-149866400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:149865200-149866400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr6:149865200-149866400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:149865200-149866400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:149865200-149866400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:149865200-149866400	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr6:149865200-149866400	Flanking Active TSS	Rectal Smooth Muscle	rectum
8	chr6:149865200-149866400	Flanking Active TSS	Dnd41	blood
9	chr6:149865400-149866400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:149865400-149866400	Flanking Active TSS	Brain Cingulate Gyrus	brain
11	chr6:149865400-149866400	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr6:149865400-149866400	Flanking Active TSS	Fetal Brain Male	brain
13	chr6:149865400-149866400	Flanking Active TSS	HUVEC	blood vessel
14	chr6:149865400-149866400	Flanking Active TSS	Osteobl	bone
15	chr6:149865400-149868200	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr6:149865600-149866400	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:149865600-149866400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr6:149865600-149866400	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr6:149865600-149866400	Flanking Active TSS	Fetal Brain Female	brain
20	chr6:149865600-149866400	Flanking Active TSS	Fetal Heart	heart
21	chr6:149865600-149866600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr6:149865600-149866600	Flanking Active TSS	Thymus	Thymus
23	chr6:149865600-149866800	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr6:149865600-149866800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr6:149865600-149867800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:149865600-149867800	Active TSS	Ovary	ovary
27	chr6:149865600-149868200	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:149865600-149868200	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr6:149865600-149868200	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:149865600-149868600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:149865800-149866400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr6:149865800-149866400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:149865800-149866400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr6:149865800-149866400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:149865800-149866400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr6:149865800-149866400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:149865800-149866400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr6:149865800-149866400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr6:149865800-149866400	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr6:149865800-149866400	Flanking Active TSS	Liver	Liver
41	chr6:149865800-149866400	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr6:149865800-149866400	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr6:149865800-149866400	Flanking Active TSS	Lung	lung
44	chr6:149865800-149866400	Flanking Active TSS	Hela-S3	cervix
45	chr6:149865800-149866400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr6:149865800-149866600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr6:149865800-149866600	Flanking Active TSS	Fetal Thymus	thymus
48	chr6:149865800-149866800	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr6:149865800-149866800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr6:149865800-149867800	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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