Variant report

Variant	rs544343731
Chromosome Location	chr19:27740107-27740108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:121483051..121485429-chr19:27736244..27740196,9	MCF-7	breast:
2	chr1:121484242..121485223-chr19:27739792..27740312,2	MCF-7	breast:
3	chr19:27739276..27740188-chr3:90489068..90489568,2	MCF-7	breast:
4	chr19:27731229..27733515-chr19:27737682..27740212,3	MCF-7	breast:
5	chr13:28193921..28196192-chr19:27738694..27740822,2	MCF-7	breast:
6	chr19:27738271..27740312-chr4:68262912..68265515,2	MCF-7	breast:
7	chr1:121482889..121485426-chr19:27733290..27740540,17	K562	blood:
8	chr16:69363397..69365027-chr19:27738551..27740871,2	MCF-7	breast:
9	chr16:31225017..31226858-chr19:27739368..27741281,2	MCF-7	breast:
10	chr1:121482889..121485426-chr19:27735763..27740540,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258429	Chromatin interaction
ENSG00000139517	Chromatin interaction
ENSG00000186184	Chromatin interaction
ENSG00000177238	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	esv10692	chr19:27731835-27741199	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
3	nsv579120	chr19:27732000-27740875	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
4	nsv579121	chr19:27732000-27769717	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
5	nsv579122	chr19:27732000-27884796	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
6	esv1792884	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
7	esv1813820	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
8	esv1817017	chr19:27732000-27972553	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
9	esv1818457	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
10	esv1829019	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
11	esv1813626	chr19:27732000-28036744	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
12	esv6253	chr19:27732001-27740579	ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
13	esv9522	chr19:27732002-27740579	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Enhancers Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
14	esv6189	chr19:27732011-27740575	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
15	nsv482718	chr19:27732070-27934662	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
16	nsv833794	chr19:27732070-27934662	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
17	esv3390474	chr19:27732713-27740635	Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
18	esv3352869	chr19:27732733-27740605	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Enhancers	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
19	esv3424744	chr19:27732799-27755395	Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
20	esv3347460	chr19:27733072-27762365	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
21	nsv428021	chr19:27733176-27905739	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
22	nsv428363	chr19:27733176-27905739	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
23	esv3370174	chr19:27733208-27740111	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	17 gene(s)	inside rSNPs	n/a
24	esv3387063	chr19:27733478-27750109	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	17 gene(s)	inside rSNPs	n/a
25	esv3448411	chr19:27733479-27755395	Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	17 gene(s)	inside rSNPs	n/a
26	nsv579124	chr19:27733647-27961912	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
27	esv1836533	chr19:27733647-27962953	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
28	esv3349653	chr19:27733874-27750165	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
29	esv3449972	chr19:27735296-27740158	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
30	esv3434576	chr19:27735990-27762391	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
31	nsv579125	chr19:27736063-28172667	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
32	esv3351015	chr19:27736253-27750165	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
33	esv3451284	chr19:27736253-27763172	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
34	esv3347079	chr19:27736393-27740235	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
35	esv3327807	chr19:27736393-27740575	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
36	esv1796414	chr19:27736608-27868006	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
37	esv3503810	chr19:27736624-27740126	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
38	esv3503811	chr19:27736624-27740126	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Enhancers	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
39	esv6160	chr19:27736638-27740226	Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
40	esv3387982	chr19:27736892-27740394	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
41	esv3450732	chr19:27736977-27740479	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
42	esv3417631	chr19:27737587-27740411	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
43	esv3428278	chr19:27737592-27770725	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
44	esv7589	chr19:27737602-27740283	ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
45	esv3451989	chr19:27737611-27750165	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
46	esv3388005	chr19:27737727-27756246	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
47	esv3433719	chr19:27737907-27750632	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
48	esv3400274	chr19:27737932-27750317	ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
49	esv3387609	chr19:27737932-27758131	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
50	esv3416891	chr19:27737950-27760030	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27731800-27740200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr19:27731800-27740400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr19:27731800-27740400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:27731800-27740400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:27731800-27740400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr19:27731800-27740400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr19:27731800-27740400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
9	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:27731800-27740400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
12	chr19:27731800-27740400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
13	chr19:27731800-27740400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
14	chr19:27731800-27740400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:27731800-27740400	ZNF genes & repeats	Fetal Heart	heart
16	chr19:27731800-27740400	ZNF genes & repeats	Fetal Lung	lung
17	chr19:27731800-27740400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
18	chr19:27731800-27740400	ZNF genes & repeats	Small Intestine	intestine
19	chr19:27731800-27740400	ZNF genes & repeats	Stomach Mucosa	stomach
20	chr19:27731800-27740600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr19:27731800-27740600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
22	chr19:27731800-27740600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:27731800-27740600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr19:27731800-27740600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:27731800-27740600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr19:27731800-27740600	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr19:27731800-27740600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
29	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
31	chr19:27731800-27740600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:27731800-27740600	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr19:27731800-27740600	ZNF genes & repeats	Liver	Liver
34	chr19:27731800-27740600	ZNF genes & repeats	Brain Angular Gyrus	brain
35	chr19:27731800-27740600	ZNF genes & repeats	Brain Anterior Caudate	brain
36	chr19:27731800-27740600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr19:27731800-27740600	ZNF genes & repeats	Brain Substantia Nigra	brain
38	chr19:27731800-27740600	ZNF genes & repeats	Colon Smooth Muscle	Colon
39	chr19:27731800-27740600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
40	chr19:27731800-27740600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
41	chr19:27731800-27740600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr19:27731800-27740600	ZNF genes & repeats	Left Ventricle	heart
43	chr19:27731800-27740600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
44	chr19:27731800-27740600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
45	chr19:27731800-27740600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
46	chr19:27731800-27740600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
47	chr19:27731800-27740600	ZNF genes & repeats	HMEC	breast
48	chr19:27731800-27740600	ZNF genes & repeats	HSMMtube	muscle
49	chr19:27731800-27740800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr19:27731800-27740800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links