Variant report

Variant	rs544680383
Chromosome Location	chr17:15602092-15602093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:15602010-15604720	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ZNF286A	TF binding region
ENSG00000187607	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
7	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv518620	chr17:15563393-15608194	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv522564	chr17:15592762-15608194	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
11	nsv962262	chr17:15601321-15609621	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15601200-15602400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:15601400-15602200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:15601400-15602200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr17:15601400-15602200	Enhancers	A549	lung
5	chr17:15601400-15602200	Enhancers	HepG2	liver
6	chr17:15601400-15602400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr17:15602000-15602200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr17:15602000-15602200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr17:15602000-15602200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:15602000-15602200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr17:15602000-15602200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr17:15602000-15602400	Enhancers	Primary B cells from cord blood	blood
13	chr17:15602000-15602400	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr17:15602000-15602400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr17:15602000-15602400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr17:15602000-15602400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:15602000-15602400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:15602000-15602400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr17:15602000-15602400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr17:15602000-15602400	Enhancers	Fetal Thymus	thymus
21	chr17:15602000-15602400	Flanking Active TSS	GM12878-XiMat	blood
22	chr17:15602000-15602400	Enhancers	Hela-S3	cervix
23	chr17:15602000-15602400	Enhancers	K562	blood
24	chr17:15602000-15602400	Enhancers	NH-A	brain
25	chr17:15602000-15602600	Enhancers	Primary B cells from peripheral blood	blood
26	chr17:15602000-15602600	Flanking Active TSS	Dnd41	blood
27	chr17:15602000-15603400	Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr17:15602000-15603400	Active TSS	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links