Variant report

Variant	rs544942763
Chromosome Location	chr6:149790612-149790613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149776800-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:149780800-149793400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:149781400-149793800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:149782200-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:149783200-149802400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:149783800-149793400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr6:149785200-149792800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:149785800-149793400	Weak transcription	Hela-S3	cervix
9	chr6:149785800-149794600	Weak transcription	Gastric	stomach
10	chr6:149785800-149794800	Weak transcription	Right Atrium	heart
11	chr6:149786000-149794200	Weak transcription	Colonic Mucosa	Colon
12	chr6:149786200-149793400	Weak transcription	Stomach Mucosa	stomach
13	chr6:149787400-149790800	Weak transcription	Lung	lung
14	chr6:149788200-149791200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:149788200-149792400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:149788200-149795200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:149788400-149794600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:149789000-149792800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:149789000-149794400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:149789200-149793800	Weak transcription	HepG2	liver
21	chr6:149789400-149806000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:149789600-149790800	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr6:149789600-149798400	Genic enhancers	Primary T cells fromperipheralblood	blood
24	chr6:149789800-149793400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:149789800-149795200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:149790000-149790800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:149790000-149791200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr6:149790000-149791600	Weak transcription	Fetal Intestine Small	intestine
29	chr6:149790000-149792200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:149790000-149792200	Weak transcription	Spleen	Spleen
31	chr6:149790000-149793000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:149790000-149793200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:149790000-149796000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr6:149790200-149791200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:149790200-149793800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:149790200-149794200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:149790200-149802000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:149790400-149791000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:149790400-149793200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr6:149790400-149794000	Weak transcription	Fetal Thymus	thymus
41	chr6:149790400-149794400	Genic enhancers	Primary B cells from peripheral blood	blood
42	chr6:149790400-149795000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:149790400-149802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:149790600-149790800	Flanking Active TSS	GM12878-XiMat	blood
45	chr6:149790600-149795600	Strong transcription	Primary monocytes fromperipheralblood	blood

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